Os09g0440600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0440600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.74 | 0.214 | 12.4 | 0.701 | 0.476 | 0.588 | -0.0538 | 0.0356 | 0.104 | 21.4 | 13.2 | 10 | -- | -- |
| 20.74 | 0.212 | 12.4 | 0.702 | 0.475 | 0.589 | -0.0172 | -- | 0.104 | 21.4 | 13.2 | 10 | -- | -- |
| 20.74 | 0.212 | 12.4 | 0.704 | 0.474 | 0.588 | -- | 0.00103 | 0.105 | 21.4 | 13.2 | 10 | -- | -- |
| 20.74 | 0.212 | 12.4 | 0.702 | 0.475 | 0.589 | -- | -- | 0.104 | 21.4 | 13.19 | 10 | -- | -- |
| 25.9 | 0.237 | 12.4 | 0.685 | -- | 0.861 | -- | -0.0271 | 0.1 | -- | 10.56 | 6 | -- | -- |
| 26.29 | 0.24 | 12.4 | 0.697 | 1.06 | -- | 0.035 | -- | 0.0885 | 22.8 | -- | -- | -- | -- |
| 26.29 | 0.24 | 12.4 | 0.696 | 1.06 | -- | -- | -- | 0.0884 | 22.8 | -- | -- | -- | -- |
| 25.9 | 0.237 | 12.4 | 0.686 | -- | 0.861 | -- | -- | 0.1 | -- | 10.54 | 6 | -- | -- |
| 33.49 | 0.27 | 12.4 | -- | 0.452 | 0.589 | -- | -- | 0.0281 | 21.5 | 10.75 | 8 | -- | -- |
| 96.28 | 0.458 | 12.4 | 0.718 | -- | -- | -- | -- | 0.0952 | -- | -- | -- | -- | -- |
| 39.05 | 0.292 | 12.4 | -- | 1.07 | -- | -- | -- | 0.0109 | 22.9 | -- | -- | -- | -- |
| 38.08 | 0.287 | 12.4 | -- | -- | 0.865 | -- | -- | 0.0309 | -- | 10 | 8 | -- | -- |
| 109.87 | 0.489 | 12.4 | -- | -- | -- | -- | -- | 0.0155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.84 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 2 | 21.07 | radiation | 10 | 10 | < th | dose dependent | sin | 1 | NA |
| 3 | 21.17 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 4 | 21.17 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 5 | 21.19 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 8 | 21.21 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 11 | 21.22 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 69 | 21.94 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 23 |
| 80 | 22.00 | radiation | 1 | 90 | > th | dose independent | rect. | 5 | 11 |
| 91 | 22.00 | radiation | 10 | 30 | > th | dose independent | rect. | 17 | 23 |
| 102 | 22.04 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 135 | 22.18 | radiation | 10 | 10 | < th | dose dependent | rect. | 2 | 15 |
| 139 | 22.19 | radiation | 10 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 142 | 22.21 | radiation | 1 | 90 | < th | dose independent | sin | 2 | NA |
| 147 | 22.22 | radiation | 1 | 90 | > th | dose independent | sin | 2 | NA |
| 161 | 22.24 | radiation | 20 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 180 | 22.30 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 263 | 22.48 | radiation | 10 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 266 | 22.48 | radiation | 10 | 10 | < th | dose dependent | rect. | 2 | 21 |
| 304 | 22.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 309 | 22.55 | radiation | 10 | 10 | > th | dose independent | no | NA | NA |
| 403 | 22.56 | humidity | 90 | 10 | < th | dose independent | rect. | 6 | 10 |
| 466 | 22.69 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 10 |
| 498 | 22.73 | radiation | 10 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 511 | 22.75 | humidity | 70 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 526 | 22.77 | radiation | 10 | 10 | < th | dose independent | rect. | 12 | 18 |
| 543 | 22.79 | radiation | 1 | 90 | < th | dose independent | rect. | 2 | 17 |
| 544 | 22.79 | radiation | 10 | 10 | < th | dose independent | rect. | 24 | 23 |
| 577 | 22.84 | radiation | 10 | 10 | < th | dose independent | rect. | 2 | 18 |
| 655 | 22.92 | humidity | 70 | 10 | > th | dose dependent | rect. | 2 | 15 |
| 749 | 22.94 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 16 | 14 |
| 807 | 22.99 | radiation | 10 | 10 | < th | dose independent | rect. | 2 | 21 |
| 808 | 22.99 | radiation | 10 | 10 | < th | dose independent | rect. | 13 | 23 |
| 846 | 23.00 | humidity | 80 | 10 | > th | dose dependent | sin | 1 | NA |
| 855 | 23.01 | radiation | 10 | 10 | < th | dose independent | no | NA | NA |
| 870 | 23.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 21 |
| 875 | 23.02 | radiation | 10 | 10 | > th | dose independent | rect. | 15 | 23 |
| 921 | 23.05 | radiation | 10 | 10 | < th | dose independent | rect. | 15 | 23 |
| 949 | 23.06 | humidity | 70 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 965 | 23.08 | humidity | 90 | 30 | < th | dose independent | rect. | 23 | 17 |
| 982 | 23.09 | radiation | 10 | 10 | > th | dose independent | rect. | 11 | 23 |
| 998 | 23.10 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |