BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0437100 Os09g0437100|Os09g0437100
         (165 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0437100  Auxin responsive SAUR protein family protein        190   5e-49
Os08g0452500  Auxin responsive SAUR protein family protein        154   4e-38

>Os09g0437100 Auxin responsive SAUR protein family protein
          Length = 165

 Score =  190 bits (482), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 100/165 (60%), Positives = 100/165 (60%)

Query: 1   MAKGGLSKLKCMIKRWHSSSRISRTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAKGGLSKLKCMIKRWHSSSRISRTP                                  
Sbjct: 1   MAKGGLSKLKCMIKRWHSSSRISRTPSGCSASAGSTSARSSHGGGRVGGEEWGRSVVASG 60

Query: 61  XXXXXXXXXXXXXXXFHGADGVPPGLHPVYVGKSRRRYLIAADLVGHPMFQNLVDRSXXX 120
                          FHGADGVPPGLHPVYVGKSRRRYLIAADLVGHPMFQNLVDRS   
Sbjct: 61  GGGGGGGGGRGGSVSFHGADGVPPGLHPVYVGKSRRRYLIAADLVGHPMFQNLVDRSGGG 120

Query: 121 XXXXXXXXXXXXXCEVVLFEHLLWMLENADPQPESLDELVEYYAC 165
                        CEVVLFEHLLWMLENADPQPESLDELVEYYAC
Sbjct: 121 GVGGGGGGGTVVGCEVVLFEHLLWMLENADPQPESLDELVEYYAC 165



>Os08g0452500 Auxin responsive SAUR protein family protein
          Length = 133

 Score =  154 bits (388), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 87/162 (53%), Positives = 93/162 (57%), Gaps = 33/162 (20%)

Query: 4   GGLSKLKCMIKRWHSSSRISRTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 63
           GGLSKL+CMI+RWHSSSRI+R P                                     
Sbjct: 5   GGLSKLRCMIRRWHSSSRIARAPPSAGELEEGSAAAAGRAAS------------------ 46

Query: 64  XXXXXXXXXXXXFHGADGVPPGLHPVYVGKSRRRYLIAADLVGHPMFQNLVDRSXXXXXX 123
                       FHGAD VP GLHPVYVGKSRRRYLIA +LVGHP+FQNLVDR+      
Sbjct: 47  ------------FHGADEVPKGLHPVYVGKSRRRYLIAEELVGHPLFQNLVDRT---GGG 91

Query: 124 XXXXXXXXXXCEVVLFEHLLWMLENADPQPESLDELVEYYAC 165
                     CEVVLFEHLLWMLENADPQPESLDELVEYYAC
Sbjct: 92  GGGGAATVVGCEVVLFEHLLWMLENADPQPESLDELVEYYAC 133



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.139    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,927,101
Number of extensions: 89862
Number of successful extensions: 202
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 2
Length of query: 165
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 72
Effective length of database: 12,179,899
Effective search space: 876952728
Effective search space used: 876952728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)