BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0436500 Os09g0436500|AK100611
(92 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0436500 Similar to Ketol-acid reductoisomerase, chloro... 166 4e-42
Os05g0573700 Similar to Ketol-acid reductoisomerase, chloro... 86 5e-18
Os01g0652600 Similar to Ketol-acid reductoisomerase, chloro... 86 6e-18
>Os09g0436500 Similar to Ketol-acid reductoisomerase, chloroplast precursor (EC
1.1.1.86) (Acetohydroxy-acid reductoisomerase)
(Alpha-keto-beta-hydroxylacil reductoisomerase)
Length = 92
Score = 166 bits (420), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/92 (88%), Positives = 81/92 (88%)
Query: 1 MYVVNYSGLQRKETWVIXXXXXXXXXXXCVYICNFVMNLFPLLPEAFKGNKQIGVIGWGS 60
MYVVNYSGLQRKETWVI CVYICNFVMNLFPLLPEAFKGNKQIGVIGWGS
Sbjct: 1 MYVVNYSGLQRKETWVIWFLFFFWLPFFCVYICNFVMNLFPLLPEAFKGNKQIGVIGWGS 60
Query: 61 QGPAQADLRDSIAQVKSDIVVKMQQSPHSKER 92
QGPAQADLRDSIAQVKSDIVVKMQQSPHSKER
Sbjct: 61 QGPAQADLRDSIAQVKSDIVVKMQQSPHSKER 92
>Os05g0573700 Similar to Ketol-acid reductoisomerase, chloroplast precursor (EC
1.1.1.86) (Acetohydroxy-acid reductoisomerase)
(Alpha-keto-beta-hydroxylacil reductoisomerase)
Length = 578
Score = 85.9 bits (211), Expect = 5e-18, Method: Composition-based stats.
Identities = 44/61 (72%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 31 YICNFVMNLFPLLPEAFKGNKQIGVIGWGSQGPAQA-DLRDSIAQVKSDIVVKMQQSPHS 89
YI NLFPLLPEAFKG KQIGVIGWGSQGPAQA +LRDS+A+ KSDIVVK+ S
Sbjct: 88 YIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGS 147
Query: 90 K 90
K
Sbjct: 148 K 148
>Os01g0652600 Similar to Ketol-acid reductoisomerase, chloroplast precursor (EC
1.1.1.86) (Acetohydroxy-acid reductoisomerase)
(Alpha-keto-beta-hydroxylacil reductoisomerase)
Length = 548
Score = 85.9 bits (211), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/61 (72%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 31 YICNFVMNLFPLLPEAFKGNKQIGVIGWGSQGPAQA-DLRDSIAQVKSDIVVKMQQSPHS 89
YI NLFPLLPEAFKG KQIGVIGWGSQGPAQA +LRDS+A+ KSDIVVK+ S
Sbjct: 58 YIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGS 117
Query: 90 K 90
K
Sbjct: 118 K 118
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,524,405
Number of extensions: 72688
Number of successful extensions: 123
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 3
Length of query: 92
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 31
Effective length of database: 13,850,747
Effective search space: 429373157
Effective search space used: 429373157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)