FiT-DB / Search/ Help/ Sample detail
|
Os01g0652600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.47 | 0.299 | 10.4 | 1.11 | 0.338 | -0.957 | 0.143 | 0.0165 | 0.293 | 1.52 | 24.9 | 4666 | -- | -- |
| 40.47 | 0.296 | 10.4 | 1.12 | 0.338 | -0.955 | 0.142 | -- | 0.294 | 1.53 | 24.91 | 4668 | -- | -- |
| 40.55 | 0.297 | 10.4 | 1.11 | 0.339 | -0.956 | -- | 0.00668 | 0.292 | 1.61 | 24.9 | 4668 | -- | -- |
| 40.55 | 0.297 | 10.4 | 1.11 | 0.339 | -0.956 | -- | -- | 0.293 | 1.62 | 24.92 | 4668 | -- | -- |
| 45.36 | 0.314 | 10.4 | 1.05 | -- | -0.938 | -- | 0.179 | 0.292 | -- | 25.1 | 5381 | -- | -- |
| 64.16 | 0.376 | 10.4 | 1.5 | 0.371 | -- | 0.158 | -- | 0.473 | 1.39 | -- | -- | -- | -- |
| 64.26 | 0.375 | 10.4 | 1.49 | 0.372 | -- | -- | -- | 0.472 | 1.48 | -- | -- | -- | -- |
| 43.01 | 0.305 | 10.4 | 1.16 | -- | -0.99 | -- | -- | 0.191 | -- | 25.4 | 2543 | -- | -- |
| 43.87 | 0.308 | 10.5 | -- | 0.336 | -1.33 | -- | -- | -0.121 | 0.874 | 20.7 | 47520 | -- | -- |
| 72.75 | 0.399 | 10.4 | 1.51 | -- | -- | -- | -- | 0.48 | -- | -- | -- | -- | -- |
| 122.9 | 0.519 | 10.4 | -- | 0.398 | -- | -- | -- | 0.306 | 1.6 | -- | -- | -- | -- |
| 49.55 | 0.328 | 10.5 | -- | -- | -1.35 | -- | -- | -0.117 | -- | 21.16 | 29810 | -- | -- |
| 132.61 | 0.538 | 10.4 | -- | -- | -- | -- | -- | 0.313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.87 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 2 | 38.95 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 3 |
| 3 | 38.98 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 9 | 39.24 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 6 |
| 40 | 39.75 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 76 | 40.12 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 79 | 40.16 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 17 |
| 91 | 40.20 | temperature | 20 | 4320 | > th | dose dependent | sin | 10 | NA |
| 198 | 40.59 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 15 |
| 209 | 40.62 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 15 |
| 230 | 40.67 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 9 |
| 248 | 40.70 | temperature | 25 | 4320 | < th | dose independent | sin | 14 | NA |
| 251 | 40.70 | temperature | 25 | 4320 | > th | dose independent | rect. | 9 | 21 |
| 255 | 40.71 | temperature | 25 | 4320 | > th | dose independent | sin | 14 | NA |
| 273 | 40.72 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 281 | 40.74 | temperature | 25 | 4320 | < th | dose independent | sin | 8 | NA |
| 289 | 40.74 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 23 |
| 290 | 40.74 | temperature | 25 | 4320 | < th | dose independent | rect. | 9 | 23 |
| 295 | 40.75 | temperature | 25 | 4320 | < th | dose independent | rect. | 9 | 21 |
| 316 | 40.78 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 338 | 40.80 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 23 |
| 346 | 40.82 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 351 | 40.82 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 23 |
| 358 | 40.83 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 23 |
| 364 | 40.85 | temperature | 25 | 4320 | > th | dose independent | sin | 8 | NA |
| 384 | 40.87 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 9 |
| 391 | 40.87 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 23 |
| 392 | 40.87 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 23 |
| 394 | 40.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 440 | 40.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 506 | 41.00 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 530 | 41.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 574 | 41.10 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 587 | 41.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 596 | 41.12 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 611 | 41.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 617 | 41.14 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 633 | 41.16 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 682 | 41.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 704 | 41.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 734 | 41.28 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 14 |
| 774 | 41.31 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 2 |
| 810 | 41.34 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 852 | 41.37 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 882 | 41.39 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 8 |
| 902 | 41.40 | temperature | 30 | 4320 | < th | dose dependent | sin | 10 | NA |
