BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0652600 Os01g0652600|AK072075
(548 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G58610.1 | chr3:21671561-21674639 FORWARD LENGTH=592 902 0.0
>AT3G58610.1 | chr3:21671561-21674639 FORWARD LENGTH=592
Length = 591
Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/527 (82%), Positives = 463/527 (87%), Gaps = 1/527 (0%)
Query: 22 AAKVSSPQVIGATMPSLDFETSVFKKEKVSLAGHDEYIVRGGRNLFPLLPEAFKGIKQIG 81
AA++ S + A + SLDFETSVFKKEKVSLAG++EYIVRGGR+LF LP+AFKGIKQIG
Sbjct: 65 AARMVSSSAVKAPV-SLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIKQIG 123
Query: 82 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFEEARAAGFTEESGTLGDIWET 141
VIGWGSQGPAQAQNLRDSL EAKSDIVVKIGLRKGS+SFEEARAAGFTEESGTLGDIWET
Sbjct: 124 VIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDIWET 183
Query: 142 XXXXXXXXXXXXXAAQADNYEEIFSHMKPNSIXXXXXXXXXXXXQSVGLDFPKNISVVAV 201
AAQADNYE+IFSHMKPNSI QS GLDFPKNISVVAV
Sbjct: 184 IAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISVVAV 243
Query: 202 CPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLE 261
CPKGMGPSVRRLYVQGKE+NGAGIN+SFAVHQDVDGRA DVALGWSVALGSPFTFATTLE
Sbjct: 244 CPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFATTLE 303
Query: 262 QEYRSDIFGERGILLGAVHGIVEALFRRYTEHGLDEDSAYKNTVECXXXXXXXXXXXXXM 321
QEYRSDIFGERGILLGAVHGIVE+LFRRYTE+G+ ED AYKNTVEC M
Sbjct: 304 QEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTISTQGM 363
Query: 322 LEVYNSLTEEGKKQFIEAYSAAYYPCMDILYECYEDVSSGSEIRSVVLAGRRFYEKEGLP 381
L VYNSL+EEGKK F AYSA++YPCM+ILYECYEDV SGSEIRSVVLAGRRFYEKEGLP
Sbjct: 364 LAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKEGLP 423
Query: 382 AFPMGNIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEI 441
AFPMGNIDQTRMWKVGERVR +RPAGDLGPL+PFTAGVYVALMMAQIE+LRKKGHSYSEI
Sbjct: 424 AFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEI 483
Query: 442 INESLIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKNAP 501
INES+IESVDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD A
Sbjct: 484 INESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAA 543
Query: 502 VNQDLISNFFSDPVHSAIEVCAQLRPTVDISVPADADFVRPELRQSS 548
+N+DLISNFFSDPVH AIEVCAQLRPTVDISVPADADFVRPELRQSS
Sbjct: 544 INRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSS 590
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,690,868
Number of extensions: 426688
Number of successful extensions: 860
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 860
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 445
Effective length of database: 8,282,721
Effective search space: 3685810845
Effective search space used: 3685810845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)