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Os09g0436500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.56 | 0.276 | 10.7 | -0.777 | 0.0937 | 0.419 | -0.88 | -0.113 | 0.209 | 16 | 20.7 | 853 | -- | -- |
| 34.59 | 0.274 | 10.7 | -0.763 | 0.0903 | 0.428 | -0.875 | -- | 0.213 | 16 | 20.7 | 885 | -- | -- |
| 35.64 | 0.278 | 10.7 | -0.782 | 0.103 | 0.359 | -- | -0.286 | 0.211 | 21.5 | 20.61 | 294 | -- | -- |
| 35.99 | 0.279 | 10.7 | -0.725 | 0.111 | 0.371 | -- | -- | 0.232 | 21.4 | 20.6 | 294 | -- | -- |
| 36.33 | 0.281 | 10.7 | -0.786 | -- | 0.368 | -- | -0.291 | 0.21 | -- | 20.65 | 327 | -- | -- |
| 40 | 0.297 | 10.7 | -0.597 | 0.0948 | -- | -0.791 | -- | 0.312 | 16.6 | -- | -- | -- | -- |
| 41.08 | 0.3 | 10.7 | -0.603 | 0.138 | -- | -- | -- | 0.308 | 19.6 | -- | -- | -- | -- |
| 36.63 | 0.282 | 10.7 | -0.729 | -- | 0.391 | -- | -- | 0.222 | -- | 20.64 | 335 | -- | -- |
| 48.66 | 0.325 | 10.7 | -- | 0.143 | 0.23 | -- | -- | 0.337 | 20.5 | 20.5 | 184 | -- | -- |
| 42.1 | 0.303 | 10.7 | -0.605 | -- | -- | -- | -- | 0.306 | -- | -- | -- | -- | -- |
| 50.67 | 0.333 | 10.7 | -- | 0.143 | -- | -- | -- | 0.375 | 19.3 | -- | -- | -- | -- |
| 49.72 | 0.328 | 10.7 | -- | -- | 0.223 | -- | -- | 0.335 | -- | 20.6 | 193 | -- | -- |
| 51.76 | 0.336 | 10.7 | -- | -- | -- | -- | -- | 0.373 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.90 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 21 |
| 3 | 33.28 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 30 | 34.33 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 39 | 34.50 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 43 | 34.53 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 4 |
| 48 | 34.59 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 17 | 9 |
| 68 | 34.66 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 9 | 21 |
| 72 | 34.70 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 77 | 34.71 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 78 | 34.71 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 19 | 7 |
| 79 | 34.71 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 17 | 10 |
| 87 | 34.74 | temperature | 20.0 | 30 | > th | dose independent | rect. | 21 | 9 |
| 92 | 34.75 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 3 |
| 107 | 34.78 | temperature | 20.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 141 | 34.88 | temperature | 20.0 | 1440 | < th | dose independent | sin | 14 | NA |
| 142 | 34.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 147 | 34.88 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 149 | 34.89 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 164 | 34.91 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 166 | 34.92 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 172 | 34.92 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 241 | 34.99 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 22 |
| 242 | 34.99 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 23 |
| 277 | 35.03 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 305 | 35.04 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 321 | 35.05 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 20 |
| 328 | 35.05 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 360 | 35.07 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 5 |
| 373 | 35.08 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 404 | 35.10 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 425 | 35.12 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |
| 436 | 35.12 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 21 |
| 471 | 35.13 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 477 | 35.14 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 485 | 35.14 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 487 | 35.14 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 489 | 35.15 | wind | 3.0 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 520 | 35.16 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 571 | 35.18 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 597 | 35.19 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 21 |
| 599 | 35.20 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 620 | 35.20 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 623 | 35.20 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 23 | 5 |
| 629 | 35.21 | temperature | 20.0 | 720 | < th | dose independent | no | NA | NA |
| 631 | 35.21 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 644 | 35.22 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 645 | 35.22 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 8 |
| 661 | 35.22 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 663 | 35.22 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 8 |
| 690 | 35.24 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 707 | 35.25 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 716 | 35.25 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 759 | 35.28 | wind | 3.0 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 764 | 35.28 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 15 |
| 792 | 35.30 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 811 | 35.31 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 812 | 35.31 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 827 | 35.31 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 6 |
| 867 | 35.34 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 890 | 35.35 | humidity | 90.0 | 30 | < th | dose independent | rect. | 2 | 7 |
| 908 | 35.35 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 14 | 3 |
| 910 | 35.35 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 10 |
| 912 | 35.36 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 6 |
| 963 | 35.38 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 972 | 35.39 | wind | 3.0 | 43200 | > th | dose independent | rect. | 24 | 2 |
