BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0433800 Os09g0433800|AK104973
         (174 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0433800  Similar to Senescence-associated protein SAG102     231   3e-61
Os04g0585700  Protein of unknown function DUF581 family protein    65   2e-11

>Os09g0433800 Similar to Senescence-associated protein SAG102
          Length = 174

 Score =  231 bits (588), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 122/174 (70%), Positives = 122/174 (70%)

Query: 1   MLPSRQRSIFXXXXXXXXXXXXXXXXXXXXXXXXXXXIISIHQQRLRVVGLQIVLAQTXX 60
           MLPSRQRSIF                           IISIHQQRLRVVGLQIVLAQT  
Sbjct: 1   MLPSRQRSIFHLGEEGGGAADAEHLGADHGDGHGDHGIISIHQQRLRVVGLQIVLAQTRH 60

Query: 61  XXXXXXXXXXLKQMQMVSXXXXXXXXXXXXXCGDFLSACSLCRLELGPDKDVYMYRGEQG 120
                     LKQMQMVS             CGDFLSACSLCRLELGPDKDVYMYRGEQG
Sbjct: 61  HHRQQHGHVVLKQMQMVSPPPAARHRRRRRPCGDFLSACSLCRLELGPDKDVYMYRGEQG 120

Query: 121 FCSEECRWQQIMTDEARERDAMAKKERLGLHHRTPRPPPAAIRGGSPRRLLAVA 174
           FCSEECRWQQIMTDEARERDAMAKKERLGLHHRTPRPPPAAIRGGSPRRLLAVA
Sbjct: 121 FCSEECRWQQIMTDEARERDAMAKKERLGLHHRTPRPPPAAIRGGSPRRLLAVA 174



>Os04g0585700 Protein of unknown function DUF581 family protein
          Length = 150

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 47/87 (54%), Gaps = 20/87 (22%)

Query: 93  GDFLSACSLCRLELGPDKDVYMYRGEQGFCSEECRWQQIMTDEARERDAMAKKERLGLHH 152
           G FL AC LCR  L  ++D+YMYRG+  FCSEECR +QI  D     D M +KE+  +  
Sbjct: 67  GHFLEACFLCRKPLASNRDIYMYRGDIPFCSEECRREQIEMD-----DEMERKEKKNISK 121

Query: 153 R-------------TPRPPPAAIRGGS 166
           +             TPRPP A  R GS
Sbjct: 122 KVAPRTPDPREVESTPRPPKA--RAGS 146



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,795,497
Number of extensions: 177072
Number of successful extensions: 1125
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1126
Number of HSP's successfully gapped: 4
Length of query: 174
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 80
Effective length of database: 12,127,685
Effective search space: 970214800
Effective search space used: 970214800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 152 (63.2 bits)