Os09g0433800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Senescence-associated protein SAG102.
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Os09g0433800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Senescence-associated protein SAG102.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 196.01 | 0.658 | 12.6 | -0.625 | 3.18 | 2.75 | 1.64 | -1.92 | 0.523 | 7.36 | 20.6 | 10 | -- | -- |
| 198.67 | 0.662 | 12.6 | -0.296 | 3.16 | 2.68 | 1.57 | -- | 0.621 | 7.36 | 20.21 | 7 | -- | -- |
| 202.72 | 0.668 | 12.6 | -0.532 | 3.16 | 2.73 | -- | -1.71 | 0.545 | 7.37 | 20.6 | 10 | -- | -- |
| 205.27 | 0.672 | 12.6 | -0.248 | 3.15 | 2.62 | -- | -- | 0.628 | 7.4 | 20.3 | 7 | -- | -- |
| 719.48 | 1.26 | 12.7 | -0.403 | -- | 2.81 | -- | -1.49 | 0.671 | -- | 13.56 | 7 | -- | -- |
| 302.78 | 0.816 | 12.5 | 0.253 | 3.06 | -- | 1.11 | -- | 1.07 | 8.58 | -- | -- | -- | -- |
| 306.8 | 0.82 | 12.5 | 0.288 | 3.05 | -- | -- | -- | 1.07 | 8.58 | -- | -- | -- | -- |
| 721.33 | 1.26 | 12.7 | -0.199 | -- | 2.78 | -- | -- | 0.728 | -- | 13.56 | 7 | -- | -- |
| 206.74 | 0.673 | 12.6 | -- | 3.15 | 2.54 | -- | -- | 0.669 | 7.44 | 20.39 | 6 | -- | -- |
| 830.99 | 1.35 | 12.6 | 0.299 | -- | -- | -- | -- | 1.09 | -- | -- | -- | -- | -- |
| 308.99 | 0.822 | 12.5 | -- | 3.05 | -- | -- | -- | 1.03 | 8.58 | -- | -- | -- | -- |
| 722.28 | 1.25 | 12.7 | -- | -- | 2.7 | -- | -- | 0.755 | -- | 12.68 | 2 | -- | -- |
| 833.35 | 1.35 | 12.6 | -- | -- | -- | -- | -- | 1.06 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 193.03 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 2 | 196.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 3 | 196.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 4 | 196.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 5 | 196.84 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 6 | 197.60 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 7 | 197.97 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 11 | 198.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 15 | 198.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 19 | 198.89 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 21 | 198.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 23 | 199.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 29 | 199.56 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 32 | 200.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 37 | 201.20 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 38 | 201.40 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 39 | 201.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 44 | 201.67 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 47 | 201.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 51 | 202.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 85 | 204.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 87 | 204.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 13 |
| 89 | 204.41 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 103 | 205.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 109 | 205.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 118 | 205.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 124 | 205.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 132 | 205.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 204 | 206.33 | radiation | 1 | 1440 | > th | dose independent | sin | 23 | NA |
| 205 | 206.33 | radiation | 1 | 1440 | < th | dose independent | sin | 23 | NA |
| 213 | 206.37 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 218 | 206.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 220 | 206.43 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 13 |
| 223 | 206.44 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 233 | 206.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 253 | 206.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 270 | 207.23 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 276 | 207.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 281 | 207.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 288 | 207.59 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 323 | 207.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 380 | 208.15 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 392 | 208.24 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 393 | 208.24 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 440 | 208.25 | wind | 9 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 443 | 208.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 458 | 208.40 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 469 | 208.44 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 483 | 208.52 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 506 | 208.58 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 513 | 208.61 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 16 |
| 520 | 208.66 | wind | 9 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 533 | 208.76 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 579 | 209.03 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 616 | 209.37 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 641 | 209.56 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 642 | 209.56 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 16 |
| 652 | 209.64 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 9 |
| 669 | 209.83 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 681 | 209.93 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 5 |
| 690 | 209.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 694 | 210.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 708 | 210.20 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 709 | 210.22 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 760 | 210.43 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 5 |
| 814 | 210.76 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 820 | 210.78 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 832 | 210.84 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 898 | 211.19 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 9 |
| 935 | 211.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 961 | 211.45 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 978 | 211.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 1000 | 211.60 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |