BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0416700 Os09g0416700|AK101300
         (217 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0416700  Vesicle transport v-SNARE family protein            436   e-123
Os08g0440000  Vesicle transport v-SNARE family protein            405   e-113
Os02g0126800  Similar to Golgi SNARE 12 protein (AtGOS12) (G...   131   3e-31

>Os09g0416700 Vesicle transport v-SNARE family protein
          Length = 217

 Score =  436 bits (1122), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/217 (100%), Positives = 217/217 (100%)

Query: 1   MEASSWDALRKQARRLEAQLDDQMIAYRKLVSMKSDGSENDIESDIERSLKQLQQVNSQM 60
           MEASSWDALRKQARRLEAQLDDQMIAYRKLVSMKSDGSENDIESDIERSLKQLQQVNSQM
Sbjct: 1   MEASSWDALRKQARRLEAQLDDQMIAYRKLVSMKSDGSENDIESDIERSLKQLQQVNSQM 60

Query: 61  QTWVSSGGSEVLSHTLTRHMEILQDLTQEFYRLRSSLRVKQQHASLLDLRDFDRAKFDVE 120
           QTWVSSGGSEVLSHTLTRHMEILQDLTQEFYRLRSSLRVKQQHASLLDLRDFDRAKFDVE
Sbjct: 61  QTWVSSGGSEVLSHTLTRHMEILQDLTQEFYRLRSSLRVKQQHASLLDLRDFDRAKFDVE 120

Query: 121 SGDSADQALLREQAAISRSSGQMDNVISHAQATLGTLMSQRSTFGGITTKISNVSSRLPT 180
           SGDSADQALLREQAAISRSSGQMDNVISHAQATLGTLMSQRSTFGGITTKISNVSSRLPT
Sbjct: 121 SGDSADQALLREQAAISRSSGQMDNVISHAQATLGTLMSQRSTFGGITTKISNVSSRLPT 180

Query: 181 INHILASIRRKKSMDTIILSLVASVCAFLILVYWLSK 217
           INHILASIRRKKSMDTIILSLVASVCAFLILVYWLSK
Sbjct: 181 INHILASIRRKKSMDTIILSLVASVCAFLILVYWLSK 217



>Os08g0440000 Vesicle transport v-SNARE family protein
          Length = 217

 Score =  405 bits (1041), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/217 (91%), Positives = 207/217 (95%)

Query: 1   MEASSWDALRKQARRLEAQLDDQMIAYRKLVSMKSDGSENDIESDIERSLKQLQQVNSQM 60
           MEASSWDALRKQARRLEAQLDDQM AYRKL+SMKSDGSENDIESDIERSLKQLQQVNSQM
Sbjct: 1   MEASSWDALRKQARRLEAQLDDQMSAYRKLISMKSDGSENDIESDIERSLKQLQQVNSQM 60

Query: 61  QTWVSSGGSEVLSHTLTRHMEILQDLTQEFYRLRSSLRVKQQHASLLDLRDFDRAKFDVE 120
           QTWVSSGGSEVLSHTLTRHMEILQDLTQEFYRLRSSLR KQQHASLLDLRDFDRAKFDVE
Sbjct: 61  QTWVSSGGSEVLSHTLTRHMEILQDLTQEFYRLRSSLRAKQQHASLLDLRDFDRAKFDVE 120

Query: 121 SGDSADQALLREQAAISRSSGQMDNVISHAQATLGTLMSQRSTFGGITTKISNVSSRLPT 180
            G  +DQALL+EQAAISRS+GQMD VIS AQATLGTLM QRSTFGGITTKISNVSSRLPT
Sbjct: 121 EGADSDQALLKEQAAISRSTGQMDTVISQAQATLGTLMLQRSTFGGITTKISNVSSRLPT 180

Query: 181 INHILASIRRKKSMDTIILSLVASVCAFLILVYWLSK 217
           IN IL+SI+RKKSMDTIILSLVASVCAFLI +YW+SK
Sbjct: 181 INQILSSIKRKKSMDTIILSLVASVCAFLIFIYWMSK 217



>Os02g0126800 Similar to Golgi SNARE 12 protein (AtGOS12) (Golgi SNAP receptor
           complex member 1-2)
          Length = 247

 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/232 (36%), Positives = 129/232 (55%), Gaps = 16/232 (6%)

Query: 1   MEASSWDALRKQARRLEAQLDDQMIAYRKLVSMKSDGSE-------------NDIESDIE 47
           ++ S W+ LR++AR+LE  LD ++ +Y +L +  S  ++               +E +I+
Sbjct: 17  LQESGWEELRREARKLEGDLDVKLSSYARLAARSSSAADAASASSPSERSSWKSMEFEIQ 76

Query: 48  RSLKQLQQVNSQM-QTWVSSGGSEVLSHTLTRHMEILQDLTQEFYRLRSSLRVKQQHASL 106
             L +LQ VN  M +   S+  +  +S  L RH +IL +  QEF R R +L   ++HA L
Sbjct: 77  SLLDKLQDVNDAMSRCAASTAPTTSVSQKLARHRDILHEFAQEFRRTRGNLSSIREHADL 136

Query: 107 LD-LRDFDRAKFDVESGDSADQALLREQAAISRSSGQMDNVISHAQATLGTLMSQRSTFG 165
           L  +RD D  +     G S    LLRE+A+I  S  Q+D VI  AQ+T   L +QR+ FG
Sbjct: 137 LSSVRD-DITESKATGGMSPRVHLLRERASIHGSINQIDEVIGQAQSTRVALSNQRALFG 195

Query: 166 GITTKISNVSSRLPTINHILASIRRKKSMDTIILSLVASVCAFLILVYWLSK 217
            +  K+  +  + P I  +L +I+RKKS DTIILS V + C   +++YWLSK
Sbjct: 196 DVQGKVKQLGEKFPVIRGLLGAIKRKKSKDTIILSAVIAACTIFLIIYWLSK 247



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.127    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,004,876
Number of extensions: 192172
Number of successful extensions: 697
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 696
Number of HSP's successfully gapped: 3
Length of query: 217
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 120
Effective length of database: 11,971,043
Effective search space: 1436525160
Effective search space used: 1436525160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)