Os09g0416700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Vesicle transport v-SNARE family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0416700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Vesicle transport v-SNARE family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.05 | 0.286 | 9.55 | -0.168 | 0.422 | 1.32 | 0.31 | -0.949 | -0.197 | 8.33 | 21.68 | 1181 | -- | -- |
| 37.62 | 0.286 | 9.52 | 0.085 | 0.425 | 1.28 | 0.369 | -- | -0.131 | 8.42 | 21.13 | 1172 | -- | -- |
| 37.29 | 0.284 | 9.55 | -0.178 | 0.403 | 1.29 | -- | -1.04 | -0.199 | 8.05 | 21.9 | 1220 | -- | -- |
| 37.93 | 0.287 | 9.52 | 0.0863 | 0.364 | 1.24 | -- | -- | -0.141 | 7.7 | 20.95 | 1288 | -- | -- |
| 44.16 | 0.31 | 9.56 | -0.171 | -- | 1.25 | -- | -0.934 | -0.188 | -- | 22.14 | 1355 | -- | -- |
| 85.49 | 0.433 | 9.46 | 0.517 | 0.409 | -- | 0.104 | -- | 0.147 | 6.14 | -- | -- | -- | -- |
| 85.52 | 0.433 | 9.46 | 0.518 | 0.409 | -- | -- | -- | 0.146 | 6.09 | -- | -- | -- | -- |
| 44.59 | 0.311 | 9.53 | 0.0948 | -- | 1.19 | -- | -- | -0.127 | -- | 21.25 | 1372 | -- | -- |
| 38.12 | 0.288 | 9.52 | -- | 0.366 | 1.25 | -- | -- | -0.143 | 7.64 | 20.91 | 1304 | -- | -- |
| 94.2 | 0.454 | 9.46 | 0.53 | -- | -- | -- | -- | 0.155 | -- | -- | -- | -- | -- |
| 92.59 | 0.45 | 9.47 | -- | 0.417 | -- | -- | -- | 0.0885 | 6.03 | -- | -- | -- | -- |
| 44.8 | 0.312 | 9.53 | -- | -- | 1.23 | -- | -- | -0.145 | -- | 21 | 1374 | -- | -- |
| 101.59 | 0.47 | 9.48 | -- | -- | -- | -- | -- | 0.0966 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 15 |
| 32 | 37.87 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 80 | 38.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 22 |
| 85 | 38.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 22 |
| 91 | 38.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 22 |
| 103 | 38.38 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 113 | 38.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 155 | 38.50 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 11 |
| 161 | 38.52 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 193 | 38.66 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 196 | 38.68 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 220 | 38.80 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 249 | 38.93 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 259 | 38.99 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 282 | 39.08 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 539 | 39.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 21 |
| 582 | 39.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 743 | 40.14 | temperature | 30 | 1440 | < th | dose dependent | sin | 19 | NA |
| 842 | 40.28 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 22 |