BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0416700 Os09g0416700|AK101300
(217 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G15880.1 | chr1:5458718-5460089 REVERSE LENGTH=224 315 1e-86
AT2G45200.2 | chr2:18637689-18639640 REVERSE LENGTH=258 129 9e-31
>AT1G15880.1 | chr1:5458718-5460089 REVERSE LENGTH=224
Length = 223
Score = 315 bits (806), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 152/220 (69%), Positives = 188/220 (85%), Gaps = 5/220 (2%)
Query: 3 ASSWDALRKQARRLEAQLDDQMIAYRKLVSMK----SDGSENDIESDIERSLKQLQQVNS 58
SSWDALRKQAR++EAQLD+QM +YR+LVS K SDG+E+D+E+ I+ L+QLQQVN+
Sbjct: 4 PSSWDALRKQARKIEAQLDEQMHSYRRLVSTKALSKSDGNESDLEAGIDLLLRQLQQVNA 63
Query: 59 QMQTWVSSGGSEVLSHTLTRHMEILQDLTQEFYRLRSSLRVKQQHASLL-DLRDFDRAKF 117
QMQ WVSSGGSE++SHTLTRH EILQDLTQEFYR RSSLR KQ+HASLL D R+FDR +
Sbjct: 64 QMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRHRSSLRAKQEHASLLEDFREFDRTRL 123
Query: 118 DVESGDSADQALLREQAAISRSSGQMDNVISHAQATLGTLMSQRSTFGGITTKISNVSSR 177
D+E G ++QAL++E I+R++ QMD VIS AQATLGTL+ QRSTFGGI +K+SNV+SR
Sbjct: 124 DLEDGYGSEQALIKEHMGINRNTAQMDGVISQAQATLGTLVFQRSTFGGINSKLSNVASR 183
Query: 178 LPTINHILASIRRKKSMDTIILSLVASVCAFLILVYWLSK 217
LPT+N ILA+I+RKKSMDTIILSLVA+VC FLI +YW++K
Sbjct: 184 LPTVNTILAAIKRKKSMDTIILSLVAAVCTFLIFIYWITK 223
>AT2G45200.2 | chr2:18637689-18639640 REVERSE LENGTH=258
Length = 257
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 130/251 (51%), Gaps = 35/251 (13%)
Query: 1 MEASSWDALRKQARRLEAQLDDQMIAYRKLVSMKSDG----------------------- 37
++ S W+ LR++AR++E LD ++ +Y KL + + G
Sbjct: 8 LQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGDTDLVMNYEKVLKCVLVSGYVDT 67
Query: 38 ---------SENDIESDIERSLKQLQQVNSQMQTWVSSGGSEV-LSHTLTRHMEILQDLT 87
S +E +I+ L++L +N M +S ++ L RH +IL + T
Sbjct: 68 GSPTVGSGRSWKSMEMEIQSLLEKLLDINDSMSRCAASAAPTTSVTQKLARHRDILHEYT 127
Query: 88 QEFYRLRSSLRVKQQHASLLD-LRDFDRAKFDVESGDSADQALLREQAAISRSSGQMDNV 146
QEF R++ ++ ++HA LL +RD D +++ S +LRE+A+I S +D+V
Sbjct: 128 QEFRRIKGNINSLREHAELLSSVRD-DISEYKASGSMSPGVQVLRERASIHGSISHIDDV 186
Query: 147 ISHAQATLGTLMSQRSTFGGITTKISNVSSRLPTINHILASIRRKKSMDTIILSLVASVC 206
I AQAT L SQRS F + K+ N+ + P I +L SI+RK+S DT+ILS V + C
Sbjct: 187 IGQAQATRAVLGSQRSLFSDVQGKVKNLGDKFPVIRGLLGSIKRKRSRDTLILSAVIAAC 246
Query: 207 AFLILVYWLSK 217
+++YWLSK
Sbjct: 247 TLFLIIYWLSK 257
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.127 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,851,529
Number of extensions: 130397
Number of successful extensions: 631
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 628
Number of HSP's successfully gapped: 2
Length of query: 217
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 123
Effective length of database: 8,529,465
Effective search space: 1049124195
Effective search space used: 1049124195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)