BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0410400 Os09g0410400|AK072004
         (125 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0410400  Zinc finger, RING-type domain containing protein    253   2e-68
Os03g0706900  Zinc finger, RING-type domain containing protein    142   7e-35

>Os09g0410400 Zinc finger, RING-type domain containing protein
          Length = 125

 Score =  253 bits (646), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   LNCFITWSYPCRYSTFCSYPPEMVKEMPKKVLVKEVQRLQLALGEQTKMAKLSQQQCDKL 60
           LNCFITWSYPCRYSTFCSYPPEMVKEMPKKVLVKEVQRLQLALGEQTKMAKLSQQQCDKL
Sbjct: 1   LNCFITWSYPCRYSTFCSYPPEMVKEMPKKVLVKEVQRLQLALGEQTKMAKLSQQQCDKL 60

Query: 61  KNEQILCRICFERDICIVLLPCRHYVLCEACSDKCRSCPICRVSIENKLPVCDAMSSADS 120
           KNEQILCRICFERDICIVLLPCRHYVLCEACSDKCRSCPICRVSIENKLPVCDAMSSADS
Sbjct: 61  KNEQILCRICFERDICIVLLPCRHYVLCEACSDKCRSCPICRVSIENKLPVCDAMSSADS 120

Query: 121 ISDTV 125
           ISDTV
Sbjct: 121 ISDTV 125



>Os03g0706900 Zinc finger, RING-type domain containing protein
          Length = 473

 Score =  142 bits (357), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 85/101 (84%)

Query: 13  YSTFCSYPPEMVKEMPKKVLVKEVQRLQLALGEQTKMAKLSQQQCDKLKNEQILCRICFE 72
           Y+TFC YPPE+V++MPK+ L +EV RLQ ALGEQ+++ K ++Q+ ++L+NE++LCRIC+E
Sbjct: 372 YNTFCGYPPEVVRKMPKRDLAEEVWRLQAALGEQSEITKCTKQEFERLQNEKVLCRICYE 431

Query: 73  RDICIVLLPCRHYVLCEACSDKCRSCPICRVSIENKLPVCD 113
            +IC+VLLPCRH  LC+ CSDKC+ CPICRV IE ++PV D
Sbjct: 432 GEICMVLLPCRHRTLCKTCSDKCKKCPICRVPIEERMPVYD 472



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.136    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,177,766
Number of extensions: 138951
Number of successful extensions: 680
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 2
Length of query: 125
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 37
Effective length of database: 12,440,969
Effective search space: 460315853
Effective search space used: 460315853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)