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Os03g0706900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.013) R2 : 0.893
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.96 (0.0318) R2dC : 0.892 R2C : 0.889
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0988 (0.0274) R2dN8 : 0.00396 R2N8 : 0.000636
σ : 0.245
deviance : 27.52
__
_____
C
peak time of C : 14.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.78 0.214 12 -0.265 1.24 -0.669 0.00342 0.288 0.0308 15 0.2697 139 -- --
20.83 0.213 12 -0.254 1.24 -0.656 -0.312 -- 0.0369 14.9 0.3 147 -- --
20.65 0.212 12 -0.273 1.22 -0.672 -- 0.283 0.0311 14.9 0.3 150 -- --
21.09 0.214 12 -0.283 1.2 -0.683 -- -- 0.0404 14.9 0.3 160 -- --
28.95 0.251 12 -0.384 -- -1.63 -- 0.262 0.0154 -- 0.6351 288 -- --
26.22 0.24 12 -0.194 1.95 -- -0.248 -- 0.0778 14.2 -- -- -- --
26.45 0.241 12 -0.201 1.95 -- -- -- 0.0764 14.2 -- -- -- --
29.01 0.251 12 -0.355 -- -1.6 -- -- 0.00746 -- 0.5498 270 -- --
22.9 0.223 12 -- 1.2 -0.681 -- -- 0.0653 14.9 0.3637 160 -- --
253.78 0.744 12 -0.283 -- -- -- -- 0.0294 -- -- -- -- --
27.52 0.245 12 -- 1.96 -- -- -- 0.0988 14.2 -- -- -- --
32.32 0.265 12 -- -- -1.59 -- -- 0.0452 -- 0.65 266 -- --
255.9 0.747 12 -- -- -- -- -- 0.0608 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 19.94 radiation 20.0 270 < th dose dependent rect. 17 11
2 19.96 humidity 50.0 270 > th dose independent rect. 17 11
6 20.08 radiation 10.0 270 < th dose independent rect. 17 11
7 20.19 precipitation 0.1 270 < th dose independent rect. 17 11
8 20.19 precipitation 0.1 270 < th dose dependent rect. 17 11
9 20.20 precipitation 0.1 270 < th dose independent rect. 4 13
10 20.20 precipitation 0.1 270 < th dose dependent rect. 4 13
11 20.23 temperature 15.0 90 > th dose independent rect. 19 10
12 20.23 wind 9.0 270 < th dose independent rect. 17 11
13 20.24 temperature 10.0 270 > th dose independent rect. 17 11
17 20.24 temperature 10.0 270 > th dose independent rect. 4 13
18 20.24 atmosphere 1015.0 270 < th dose independent rect. 4 13
20 20.38 wind 9.0 270 < th dose independent rect. 4 13
24 20.52 atmosphere 995.0 270 > th dose independent rect. 4 13
27 20.75 precipitation 0.1 90 < th dose independent rect. 19 10
28 20.75 precipitation 0.1 90 < th dose dependent rect. 19 10
29 20.79 wind 1.0 270 > th dose independent rect. 17 11
31 20.81 radiation 40.0 720 < th dose independent rect. 14 19
32 20.83 atmosphere 995.0 270 > th dose independent rect. 17 11
37 20.85 radiation 40.0 720 < th dose independent rect. 14 10
40 20.87 radiation 40.0 720 < th dose independent rect. 5 4
42 20.87 temperature 30.0 270 < th dose independent rect. 17 11
43 20.87 radiation 1.0 90 > th dose independent rect. 16 18
47 20.92 radiation 1.0 90 < th dose dependent rect. 19 10
49 20.93 wind 9.0 90 < th dose independent rect. 19 10
51 20.93 temperature 30.0 90 < th dose independent rect. 19 10
52 20.93 humidity 50.0 90 > th dose independent rect. 19 10
54 20.93 atmosphere 995.0 90 > th dose independent rect. 19 10
55 20.93 radiation 20.0 90 < th dose independent rect. 19 10
60 20.93 radiation 30.0 90 < th dose dependent rect. 19 10
67 20.95 radiation 1.0 90 < th dose independent rect. 19 10
69 20.95 radiation 1.0 90 < th dose dependent rect. 15 14
76 21.01 humidity 50.0 720 > th dose dependent rect. 21 4
121 21.15 radiation 40.0 90 < th dose independent rect. 5 14
122 21.15 temperature 10.0 720 > th dose dependent rect. 5 3
134 21.23 radiation 40.0 720 < th dose independent rect. 21 12
147 21.33 radiation 30.0 720 < th dose independent rect. 22 10
154 21.36 precipitation 0.1 720 < th dose independent rect. 5 4
155 21.36 precipitation 0.1 720 < th dose dependent rect. 5 4
158 21.37 wind 9.0 720 < th dose independent rect. 5 4
159 21.37 temperature 10.0 720 > th dose independent rect. 5 4
160 21.37 humidity 50.0 720 > th dose independent rect. 5 4
161 21.37 atmosphere 995.0 720 > th dose independent rect. 5 4
162 21.37 atmosphere 1015.0 720 < th dose independent rect. 5 4
164 21.37 temperature 10.0 720 > th dose independent rect. 9 20
169 21.38 radiation 1.0 90 < th dose dependent rect. 10 19
173 21.40 radiation 1.0 90 < th dose dependent sin 12 NA
178 21.42 radiation 20.0 90 < th dose independent rect. 6 13
181 21.43 wind 9.0 720 < th dose independent rect. 17 4
186 21.44 radiation 20.0 270 < th dose dependent rect. 5 3
192 21.45 precipitation 0.1 720 < th dose independent rect. 9 20
194 21.45 precipitation 0.1 720 < th dose dependent rect. 9 20
195 21.46 radiation 1.0 720 < th dose dependent rect. 1 4
204 21.49 wind 7.0 720 < th dose independent rect. 1 4
205 21.49 temperature 10.0 270 > th dose independent rect. 21 11
206 21.49 temperature 30.0 270 < th dose independent rect. 21 11
207 21.49 humidity 50.0 270 > th dose independent rect. 21 11
209 21.49 atmosphere 995.0 270 > th dose independent rect. 21 11
217 21.49 temperature 10.0 270 > th dose independent rect. 8 13
218 21.49 precipitation 0.1 270 < th dose independent rect. 24 13
219 21.49 humidity 50.0 270 > th dose independent rect. 7 22
220 21.49 precipitation 0.1 270 < th dose dependent rect. 24 13
221 21.49 radiation 1.0 90 < th dose dependent rect. 19 16
222 21.50 radiation 40.0 720 < th dose independent rect. 14 3
223 21.50 temperature 10.0 720 > th dose independent rect. 17 4
224 21.50 radiation 30.0 720 < th dose independent rect. 17 4
226 21.50 wind 9.0 270 < th dose independent rect. 21 11
229 21.50 temperature 10.0 720 > th dose independent rect. 21 20
231 21.50 radiation 40.0 90 < th dose dependent rect. 6 13
234 21.52 temperature 15.0 30 > th dose independent rect. 10 19
252 21.58 precipitation 0.1 720 < th dose independent rect. 1 4
253 21.58 precipitation 0.1 720 < th dose independent rect. 17 4
254 21.58 temperature 10.0 720 > th dose independent rect. 14 10
255 21.58 temperature 10.0 720 > th dose independent rect. 24 14
256 21.58 atmosphere 995.0 720 > th dose independent rect. 24 14
257 21.58 precipitation 0.1 720 < th dose dependent rect. 1 4
258 21.58 precipitation 0.1 720 < th dose dependent rect. 17 4
260 21.59 radiation 1.0 90 < th dose independent sin 12 NA
265 21.60 humidity 50.0 270 > th dose independent rect. 8 13
267 21.60 humidity 70.0 720 > th dose dependent rect. 22 1
272 21.62 wind 1.0 720 > th dose independent rect. 17 4
273 21.62 temperature 10.0 720 > th dose independent rect. 2 10
274 21.62 atmosphere 995.0 720 > th dose independent rect. 2 10
276 21.62 temperature 10.0 720 > th dose independent rect. 12 14
282 21.64 radiation 40.0 90 < th dose dependent rect. 5 6
283 21.64 radiation 1.0 90 < th dose dependent rect. 17 18
286 21.65 humidity 50.0 90 > th dose independent rect. 10 19
287 21.65 atmosphere 995.0 720 > th dose independent rect. 21 20
290 21.65 temperature 10.0 90 > th dose dependent rect. 5 14
294 21.66 temperature 10.0 720 > th dose independent rect. 1 4
295 21.66 temperature 30.0 720 < th dose independent rect. 1 4
296 21.66 humidity 50.0 720 > th dose independent rect. 1 4
299 21.66 atmosphere 995.0 720 > th dose independent rect. 1 4
300 21.66 radiation 20.0 720 < th dose independent rect. 1 4
303 21.66 temperature 10.0 720 > th dose independent rect. 10 10
304 21.66 atmosphere 1015.0 720 < th dose independent rect. 10 10
306 21.66 temperature 10.0 720 > th dose independent rect. 20 14
307 21.66 atmosphere 995.0 720 > th dose independent rect. 20 14
308 21.66 temperature 10.0 720 > th dose independent rect. 5 20
321 21.67 humidity 50.0 270 > th dose dependent rect. 21 12
324 21.68 radiation 1.0 720 < th dose independent rect. 1 4
335 21.68 radiation 1.0 90 < th dose dependent rect. 15 20
337 21.69 radiation 40.0 90 < th dose independent rect. 5 5
347 21.69 atmosphere 1015.0 270 < th dose independent rect. 24 13
350 21.69 humidity 50.0 720 > th dose independent rect. 20 14
360 21.71 temperature 10.0 720 > th dose independent rect. 13 4
361 21.71 atmosphere 1015.0 720 < th dose independent rect. 13 4
362 21.71 wind 9.0 720 < th dose independent rect. 2 10
363 21.71 atmosphere 1010.0 90 < th dose independent rect. 19 10
366 21.71 precipitation 0.1 270 < th dose independent rect. 8 13
368 21.71 temperature 10.0 720 > th dose independent rect. 17 20
369 21.71 precipitation 0.1 270 < th dose dependent rect. 8 13
372 21.71 radiation 1.0 90 < th dose dependent rect. 19 22
384 21.72 wind 1.0 270 > th dose independent rect. 8 20
392 21.73 atmosphere 1015.0 270 < th dose independent rect. 8 13
397 21.74 wind 9.0 720 < th dose independent rect. 24 14
398 21.74 radiation 20.0 90 < th dose independent rect. 5 22
408 21.76 wind 9.0 270 < th dose independent rect. 8 13
409 21.76 wind 9.0 720 < th dose independent rect. 20 14
416 21.77 wind 9.0 720 < th dose independent rect. 17 20
422 21.78 radiation 20.0 270 < th dose independent rect. 5 3
427 21.78 humidity 60.0 270 > th dose dependent rect. 5 2
434 21.79 radiation 40.0 10 < th dose dependent rect. 6 14
437 21.80 precipitation 0.1 720 < th dose independent rect. 2 10
444 21.80 precipitation 0.1 720 < th dose dependent rect. 2 10
446 21.81 temperature 15.0 10 > th dose independent rect. 20 10
447 21.81 precipitation 0.1 270 < th dose independent rect. 21 11
449 21.81 radiation 1.0 270 < th dose independent rect. 8 20
451 21.81 precipitation 0.1 270 < th dose dependent rect. 21 11
456 21.82 temperature 30.0 90 < th dose independent rect. 5 5
460 21.83 temperature 30.0 90 < th dose independent rect. 10 19
480 21.87 atmosphere 1015.0 720 < th dose independent rect. 17 4
488 21.87 radiation 1.0 90 < th dose dependent rect. 19 20
489 21.88 temperature 30.0 720 < th dose independent rect. 5 4
505 21.89 wind 9.0 270 < th dose independent rect. 13 11
509 21.89 wind 1.0 270 > th dose independent rect. 8 13
513 21.89 precipitation 0.1 720 < th dose independent rect. 17 20
515 21.89 humidity 50.0 90 > th dose dependent rect. 5 5
518 21.89 precipitation 0.1 720 < th dose dependent rect. 17 20
529 21.91 wind 9.0 270 < th dose dependent rect. 5 2
532 21.91 temperature 10.0 90 > th dose dependent rect. 19 10
544 21.93 humidity 70.0 270 > th dose independent rect. 5 2
545 21.93 wind 9.0 90 < th dose independent rect. 5 5
550 21.93 radiation 1.0 90 < th dose independent rect. 19 16
556 21.94 temperature 10.0 90 > th dose independent rect. 5 5
558 21.94 humidity 50.0 90 > th dose independent rect. 5 5
559 21.94 atmosphere 995.0 90 > th dose independent rect. 5 5
560 21.94 atmosphere 1015.0 90 < th dose independent rect. 5 5
567 21.94 precipitation 0.1 90 < th dose independent rect. 10 19
570 21.94 precipitation 0.1 90 < th dose dependent rect. 10 19
572 21.95 wind 7.0 270 < th dose independent rect. 5 2
574 21.95 temperature 10.0 270 > th dose independent rect. 5 2
576 21.95 temperature 30.0 270 < th dose independent rect. 5 2
577 21.95 humidity 50.0 270 > th dose independent rect. 5 2
579 21.95 atmosphere 995.0 270 > th dose independent rect. 5 2
580 21.95 atmosphere 1015.0 270 < th dose independent rect. 5 2
582 21.95 precipitation 0.1 270 < th dose independent rect. 5 2
583 21.95 precipitation 0.1 90 < th dose independent rect. 5 5
587 21.95 temperature 10.0 270 > th dose independent rect. 7 22
589 21.95 precipitation 0.1 270 < th dose dependent rect. 5 2
590 21.95 precipitation 0.1 90 < th dose dependent rect. 5 5
598 21.97 wind 9.0 720 < th dose independent rect. 13 4
602 21.97 precipitation 0.1 270 < th dose independent rect. 7 22
604 21.97 precipitation 0.1 270 < th dose dependent rect. 7 22
605 21.97 radiation 1.0 90 < th dose dependent rect. 17 23
607 21.98 atmosphere 1015.0 720 < th dose independent rect. 2 10
619 22.00 radiation 30.0 10 < th dose dependent rect. 6 21
621 22.01 radiation 1.0 720 > th dose independent rect. 9 4
624 22.01 precipitation 0.1 720 < th dose independent rect. 18 18
627 22.01 precipitation 0.1 720 < th dose dependent rect. 18 18
633 22.02 precipitation 0.1 270 < th dose independent rect. 13 11
638 22.02 radiation 20.0 10 < th dose independent rect. 6 21
639 22.02 wind 9.0 90 < th dose dependent rect. 5 5
642 22.02 precipitation 0.1 270 < th dose dependent rect. 13 11
647 22.03 wind 1.0 90 > th dose independent rect. 10 19
652 22.04 radiation 20.0 1440 > th dose independent rect. 9 3
654 22.04 radiation 20.0 1440 < th dose independent rect. 9 3
655 22.04 atmosphere 995.0 720 > th dose independent rect. 13 4
664 22.04 wind 9.0 90 < th dose independent rect. 10 19
665 22.04 temperature 10.0 1440 > th dose independent rect. 11 19
684 22.06 precipitation 0.1 720 < th dose independent rect. 10 10
685 22.06 radiation 40.0 10 < th dose independent rect. 6 14
693 22.06 precipitation 0.1 720 < th dose dependent rect. 10 10
697 22.07 radiation 1.0 90 > th dose independent sin 12 NA
708 22.08 wind 1.0 90 > th dose independent rect. 5 14
719 22.09 radiation 1.0 90 < th dose dependent no NA NA
729 22.10 humidity 50.0 270 > th dose independent rect. 24 13
730 22.10 radiation 20.0 10 < th dose independent rect. 6 14
739 22.11 radiation 20.0 1440 > th dose independent rect. 11 1
740 22.11 precipitation 0.1 720 < th dose independent rect. 13 4
757 22.11 radiation 1.0 90 > th dose independent rect. 12 23
760 22.11 precipitation 0.1 720 < th dose dependent rect. 13 4
768 22.12 radiation 1.0 14400 > th dose independent rect. 18 1
772 22.12 temperature 10.0 720 > th dose independent rect. 9 4
773 22.12 atmosphere 995.0 720 > th dose independent rect. 9 4
774 22.12 atmosphere 1015.0 720 < th dose independent rect. 9 4
781 22.12 atmosphere 995.0 720 > th dose independent rect. 6 10
785 22.12 temperature 10.0 720 > th dose independent rect. 13 20
786 22.12 radiation 1.0 1440 > th dose dependent rect. 8 4
787 22.12 radiation 40.0 720 < th dose dependent rect. 17 4
793 22.13 precipitation 0.1 720 < th dose independent rect. 9 4
801 22.13 atmosphere 995.0 90 > th dose independent rect. 10 19
803 22.13 radiation 30.0 1440 < th dose dependent rect. 8 4
804 22.13 precipitation 0.1 720 < th dose dependent rect. 9 4
807 22.14 humidity 50.0 720 > th dose independent rect. 2 10
810 22.14 wind 9.0 270 < th dose independent rect. 7 22
812 22.14 radiation 40.0 1440 < th dose dependent rect. 9 1
816 22.15 wind 1.0 720 > th dose independent rect. 13 4
837 22.16 temperature 20.0 10 > th dose independent rect. 6 14
839 22.16 radiation 1.0 90 < th dose independent rect. 19 22
840 22.16 radiation 1.0 1440 > th dose dependent rect. 9 1
861 22.18 temperature 10.0 90 > th dose dependent rect. 5 5
867 22.19 wind 1.0 43200 < th dose independent rect. 2 3
877 22.19 temperature 10.0 720 > th dose independent rect. 21 4
878 22.19 temperature 30.0 720 < th dose independent rect. 21 4
879 22.19 humidity 50.0 720 > th dose independent rect. 21 4
882 22.19 atmosphere 995.0 720 > th dose independent rect. 21 4
883 22.19 radiation 1.0 720 < th dose independent rect. 21 4
898 22.19 temperature 10.0 720 > th dose independent rect. 1 20
903 22.19 radiation 1.0 720 < th dose dependent rect. 21 4
920 22.20 wind 9.0 720 < th dose independent rect. 9 20
929 22.21 radiation 20.0 1440 < th dose independent rect. 11 1
931 22.21 wind 1.0 43200 > th dose independent rect. 2 3
977 22.23 atmosphere 1015.0 270 < th dose dependent rect. 5 2
986 22.23 radiation 40.0 90 < th dose dependent rect. 5 22