Os09g0410400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os09g0410400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.7 | 0.471 | 8.42 | -1.59 | 0.98 | -1.13 | -0.0749 | -1 | 0.00881 | 18.3 | 84.01 | 2675 | -- | -- |
| 101.7 | 0.47 | 8.41 | -1.5 | 0.986 | -1.23 | -0.0839 | -- | 0.0188 | 18.3 | 84.38 | 2666 | -- | -- |
| 100.72 | 0.467 | 8.42 | -1.59 | 0.98 | -1.12 | -- | -1.01 | 0.00599 | 18.3 | 83.77 | 2671 | -- | -- |
| 101.7 | 0.47 | 8.41 | -1.5 | 0.981 | -1.24 | -- | -- | 0.0288 | 18.3 | 84.58 | 2671 | -- | -- |
| 149.91 | 0.57 | 8.41 | -1.61 | -- | -1.2 | -- | -0.925 | -0.0202 | -- | 84 | 2724 | -- | -- |
| 134.58 | 0.544 | 8.4 | -1.6 | 1.04 | -- | 0.0865 | -- | 0.042 | 17.7 | -- | -- | -- | -- |
| 134.6 | 0.543 | 8.4 | -1.6 | 1.04 | -- | -- | -- | 0.0424 | 17.7 | -- | -- | -- | -- |
| 150.81 | 0.572 | 8.39 | -1.53 | -- | -1.33 | -- | -- | 0.0138 | -- | 85 | 2719 | -- | -- |
| 157.45 | 0.584 | 8.39 | -- | 1 | -1.31 | -- | -- | 0.0995 | 18.2 | 77 | 2639 | -- | -- |
| 190.27 | 0.645 | 8.39 | -1.63 | -- | -- | -- | -- | 0.0177 | -- | -- | -- | -- | -- |
| 202.09 | 0.665 | 8.36 | -- | 1.06 | -- | -- | -- | 0.221 | 17.6 | -- | -- | -- | -- |
| 209.24 | 0.674 | 8.37 | -- | -- | -1.4 | -- | -- | 0.0958 | -- | 79 | 2699 | -- | -- |
| 260.61 | 0.754 | 8.35 | -- | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.13 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 2 | 97.17 | wind | 3 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 3 | 97.66 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 4 | 97.67 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 6 | 97.69 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 13 |
| 12 | 98.01 | humidity | 80 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 13 | 98.03 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 22 | 98.21 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 26 | 98.29 | wind | 3 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 27 | 98.29 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 35 | 98.51 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 42 | 98.58 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 44 | 98.66 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 56 | 98.78 | wind | 3 | 43200 | < th | dose independent | sin | 5 | NA |
| 67 | 98.92 | wind | 3 | 43200 | > th | dose independent | sin | 4 | NA |
| 76 | 99.00 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 82 | 99.13 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 85 | 99.15 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 87 | 99.15 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 12 |
| 109 | 99.41 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 151 | 99.72 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 160 | 99.78 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 11 |
| 177 | 99.91 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 189 | 99.98 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 204 | 100.11 | humidity | 60 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 240 | 100.27 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 243 | 100.28 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 15 |
| 250 | 100.35 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 15 |
| 251 | 100.35 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 15 |
| 263 | 100.41 | wind | 5 | 43200 | < th | dose dependent | sin | 4 | NA |
| 275 | 100.47 | wind | 5 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 284 | 100.50 | wind | 3 | 43200 | < th | dose dependent | sin | 6 | NA |
| 313 | 100.61 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 401 | 100.98 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 402 | 100.99 | humidity | 60 | 14400 | < th | dose independent | sin | 13 | NA |
| 413 | 101.05 | humidity | 60 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 419 | 101.06 | humidity | 60 | 14400 | > th | dose independent | rect. | 15 | 12 |
| 425 | 101.07 | humidity | 60 | 14400 | > th | dose independent | rect. | 15 | 10 |
| 539 | 101.38 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 11 |
| 542 | 101.39 | wind | 9 | 43200 | < th | dose dependent | sin | 3 | NA |
| 552 | 101.44 | wind | 1 | 43200 | > th | dose dependent | sin | 3 | NA |
| 554 | 101.45 | wind | 1 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 579 | 101.52 | wind | 3 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 580 | 101.53 | humidity | 60 | 14400 | > th | dose independent | sin | 13 | NA |
| 658 | 101.80 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 763 | 102.22 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 789 | 102.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 4 |
| 828 | 102.38 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 901 | 102.61 | humidity | 70 | 14400 | < th | dose dependent | sin | 12 | NA |
| 951 | 102.81 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 965 | 102.86 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 967 | 102.86 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 972 | 102.87 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 1 |