BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0410400 Os09g0410400|AK072004
(125 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G73950.1 | chr1:27800126-27804476 REVERSE LENGTH=467 151 7e-38
AT1G18470.1 | chr1:6356407-6360057 REVERSE LENGTH=468 144 1e-35
AT1G68820.1 | chr1:25865852-25868800 FORWARD LENGTH=469 126 2e-30
AT4G39050.1 | chr4:18193462-18200148 FORWARD LENGTH=1056 69 7e-13
AT2G21380.1 | chr2:9141833-9148883 FORWARD LENGTH=1059 65 1e-11
AT1G45976.1 | chr1:17199371-17200680 FORWARD LENGTH=326 47 3e-06
AT1G79110.1 | chr1:29759345-29760586 FORWARD LENGTH=359 45 6e-06
>AT1G73950.1 | chr1:27800126-27804476 REVERSE LENGTH=467
Length = 466
Score = 151 bits (382), Expect = 7e-38, Method: Composition-based stats.
Identities = 65/101 (64%), Positives = 85/101 (84%)
Query: 13 YSTFCSYPPEMVKEMPKKVLVKEVQRLQLALGEQTKMAKLSQQQCDKLKNEQILCRICFE 72
Y+TFC +PPE+VK+MPKK L +EV RLQ ALGEQT++ K SQQ+ ++L+NE++LCR+CFE
Sbjct: 365 YNTFCGHPPEIVKKMPKKELAEEVWRLQAALGEQTEITKFSQQEYERLQNEKVLCRVCFE 424
Query: 73 RDICIVLLPCRHYVLCEACSDKCRSCPICRVSIENKLPVCD 113
R+I +VLLPCRH VLC CSDKC+ CP CR++IE +LPV D
Sbjct: 425 REISVVLLPCRHRVLCRNCSDKCKKCPFCRITIEERLPVYD 465
>AT1G18470.1 | chr1:6356407-6360057 REVERSE LENGTH=468
Length = 467
Score = 144 bits (363), Expect = 1e-35, Method: Composition-based stats.
Identities = 62/101 (61%), Positives = 83/101 (82%)
Query: 13 YSTFCSYPPEMVKEMPKKVLVKEVQRLQLALGEQTKMAKLSQQQCDKLKNEQILCRICFE 72
Y+TF +PPE+VK+MPK+ L +EV RLQ ALGEQT++ K SQQ+ ++L+NE++LCR+CFE
Sbjct: 366 YNTFSGHPPEIVKKMPKEDLAEEVWRLQAALGEQTEITKFSQQEYERLQNEKVLCRVCFE 425
Query: 73 RDICIVLLPCRHYVLCEACSDKCRSCPICRVSIENKLPVCD 113
+DI +VLLPCRH VLC C+DKC +CPICR+ IE +L V D
Sbjct: 426 KDISLVLLPCRHRVLCRTCADKCTTCPICRIDIEKRLSVYD 466
>AT1G68820.1 | chr1:25865852-25868800 FORWARD LENGTH=469
Length = 468
Score = 126 bits (317), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 78/105 (74%)
Query: 9 YPCRYSTFCSYPPEMVKEMPKKVLVKEVQRLQLALGEQTKMAKLSQQQCDKLKNEQILCR 68
Y + + ++ PE+VK+MPK LV+E+ RLQ AL EQT + SQQ+ ++L+NE+ILCR
Sbjct: 363 YSGEATGYNTFSPEVVKKMPKSDLVEEIWRLQAALSEQTDITSYSQQEYERLQNEKILCR 422
Query: 69 ICFERDICIVLLPCRHYVLCEACSDKCRSCPICRVSIENKLPVCD 113
+CFE I +VLLPCRH+VLC C +KC+ CPICRV IE ++PV D
Sbjct: 423 VCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICRVLIEERMPVYD 467
>AT4G39050.1 | chr4:18193462-18200148 FORWARD LENGTH=1056
Length = 1055
Score = 68.6 bits (166), Expect = 7e-13, Method: Composition-based stats.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 10/94 (10%)
Query: 21 PEMV-----KEMPKKVLVKEVQRLQLALGEQTKMAKLSQQQCDKLKNEQILCRICFERDI 75
PE+V +E PK+ + V RL+ + E + SQ D N I C++CFE
Sbjct: 962 PEVVVVAKTEETPKEEPL--VARLKARMQEMKEKEMKSQANGDA--NSHI-CKVCFESPT 1016
Query: 76 CIVLLPCRHYVLCEACSDKCRSCPICRVSIENKL 109
+LLPCRH+ LC++CS C CPICR I ++L
Sbjct: 1017 AAILLPCRHFCLCKSCSLACSECPICRTKISDRL 1050
>AT2G21380.1 | chr2:9141833-9148883 FORWARD LENGTH=1059
Length = 1058
Score = 64.7 bits (156), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 66 LCRICFERDICIVLLPCRHYVLCEACSDKCRSCPICRVSIENKL 109
+C++CFE +LLPCRH+ LC++CS C CPICR I ++L
Sbjct: 1010 ICKVCFESPTATILLPCRHFCLCKSCSLACSECPICRTKISDRL 1053
>AT1G45976.1 | chr1:17199371-17200680 FORWARD LENGTH=326
Length = 325
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 65 ILCRICFERDICIVLLPCRHYVLCEACSDKCRSCPICRVS 104
++CR C R++C++LLPC H LC+ C K SCP+C+ S
Sbjct: 277 MMCRFCGVREMCMLLLPCNHMCLCKECERKLSSCPLCQSS 316
>AT1G79110.1 | chr1:29759345-29760586 FORWARD LENGTH=359
Length = 358
Score = 45.4 bits (106), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 66 LCRICFERDICIVLLPCRHYVLCEACSDKCRSCPIC 101
+CR C E + C++LLPCRH LC C +CPIC
Sbjct: 309 MCRNCGEEESCVLLLPCRHLCLCGVCGSSVHTCPIC 344
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.136 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,776,156
Number of extensions: 99525
Number of successful extensions: 535
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 13
Length of query: 125
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 39
Effective length of database: 8,748,793
Effective search space: 341202927
Effective search space used: 341202927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 105 (45.1 bits)