BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0400200 Os09g0400200|AK072000
(180 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0400200 Similar to Cinnamyl alcohol dehydrogenase (EC ... 248 1e-66
Os09g0400100 Similar to Cinnamyl alcohol dehydrogenase (EC ... 215 1e-56
>Os09g0400200 Similar to Cinnamyl alcohol dehydrogenase (EC 1.1.1.195)
Length = 180
Score = 248 bits (634), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 141/180 (78%), Positives = 141/180 (78%)
Query: 1 MTSTSAVMPCSPAKSSMAWQSLMPPTQLPVMPFPPGTMAYAGSSSGLVGPPTNTICAIGF 60
MTSTSAVMPCSPAKSSMAWQSLMPPTQLPVMPFPPGTMAYAGSSSGLVGPPTNTICAIGF
Sbjct: 1 MTSTSAVMPCSPAKSSMAWQSLMPPTQLPVMPFPPGTMAYAGSSSGLVGPPTNTICAIGF 60
Query: 61 ISENSGAIGCQADTVLRIPSMVAAAAAIWPASRLTRNXXXXXXXXXXXXFPGDVLMTVTR 120
ISENSGAIGCQADTVLRIPSMVAAAAAIWPASRLTRN FPGDVLMTVTR
Sbjct: 61 ISENSGAIGCQADTVLRIPSMVAAAAAIWPASRLTRNSSAPRCSSASCRFPGDVLMTVTR 120
Query: 121 IPNALANLXXXXXXXXXXXXXXCFPGAFRPWITIGLYTVTPAHXXXXXXXXXXXXXTRST 180
IPNALANL CFPGAFRPWITIGLYTVTPAH TRST
Sbjct: 121 IPNALANLTATWPSPPRPTTPTCFPGAFRPWITIGLYTVTPAHSSGAALSSGSPAGTRST 180
>Os09g0400100 Similar to Cinnamyl alcohol dehydrogenase (EC 1.1.1.195)
Length = 164
Score = 215 bits (547), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/164 (72%), Positives = 119/164 (72%)
Query: 17 MAWQSLMPPTQLPVMPFPPGTMAYAGSSSGLVGPPTNTICAIGFISENSGAIGCQADTVL 76
MAWQSLMPPTQLPVMPFPPGTMAYAGSSSGLVG PTNTICAIGFIS NSGA GC ADTVL
Sbjct: 1 MAWQSLMPPTQLPVMPFPPGTMAYAGSSSGLVGAPTNTICAIGFISANSGATGCHADTVL 60
Query: 77 RIPSMVAAAAAIWPASRLTRNXXXXXXXXXXXXFPGDVLMTVTRIPNALANLXXXXXXXX 136
RIPSMV AAAAIWPASRLTRN FPGDVLMTVTRIPNALANL
Sbjct: 61 RIPSMVPAAAAIWPASRLTRNSSAPRCSSASRRFPGDVLMTVTRIPNALANLTATWPSPP 120
Query: 137 XXXXXXCFPGAFRPWITIGLYTVTPAHXXXXXXXXXXXXXTRST 180
CFPGAF PWITIGLYTVTPAH TRST
Sbjct: 121 RPTTPTCFPGAFSPWITIGLYTVTPAHSSGAAPSSGSPAGTRST 164
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.131 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,462,282
Number of extensions: 214695
Number of successful extensions: 809
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 807
Number of HSP's successfully gapped: 2
Length of query: 180
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 86
Effective length of database: 12,127,685
Effective search space: 1042980910
Effective search space used: 1042980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)