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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0400200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cinnamyl alcohol dehydrogenase (EC 1.1.1.195).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.33 (0.0456) R2 : 0.512
β1 : 1.1 (0.169) R2dD : 0.0484 R2D : -0.058
β2 : 1.62 (0.115) R2dC : 0.213 R2C : 0.146
β3 : 1.78 (0.136) R2dE : 0.197 R2E : 0.0579
β4 : 2.55 (0.496) R2dD*C : 0.0285 R2D*C : -0.013
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.22 (0.0988) R2dN8 : 0.227 R2N8 : 0.0723
σ : 0.847
deviance : 330.51
__
_____
C
peak time of C : 20
E
wheather : humidity
threshold : 70.68
memory length : 1308
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
330.64 0.854 4.33 1.09 1.61 1.78 2.54 0.04 1.21 19.9 70.12 1320 -- --
330.51 0.847 4.33 1.1 1.62 1.78 2.55 -- 1.22 20 70.68 1308 -- --
349.6 0.871 4.33 1.03 1.61 1.76 -- -0.0866 1.22 19.9 70.36 1323 -- --
349.59 0.871 4.33 1.02 1.61 1.76 -- -- 1.21 19.9 70.39 1319 -- --
484.28 1.02 4.31 0.817 -- 1.76 -- 0.388 1.13 -- 73.01 1383 -- --
449.7 0.994 4.39 0.678 1.63 -- 2.5 -- 0.952 19.3 -- -- -- --
466.51 1.01 4.39 0.624 1.64 -- -- -- 0.957 19.3 -- -- -- --
484.91 1.03 4.29 0.937 -- 1.84 -- -- 1.19 -- 73.61 1374 -- --
370.66 0.897 4.36 -- 1.65 1.87 -- -- 1.1 20.1 74.99 1276 -- --
608.34 1.15 4.35 0.596 -- -- -- -- 0.929 -- -- -- -- --
476.78 1.02 4.4 -- 1.63 -- -- -- 0.887 19.3 -- -- -- --
506.09 1.05 4.31 -- -- 1.84 -- -- 1.08 -- 74.64 1379 -- --
617.7 1.16 4.36 -- -- -- -- -- 0.863 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 324.35 humidity 60 1440 > th dose dependent rect. 11 3
2 324.95 humidity 80 1440 < th dose independent rect. 7 8
9 326.63 humidity 80 1440 < th dose independent sin 2 NA
12 326.86 humidity 80 1440 > th dose independent rect. 6 10
23 327.75 humidity 80 1440 > th dose independent sin 1 NA
34 328.63 humidity 70 1440 > th dose independent rect. 18 22
63 329.53 humidity 70 1440 > th dose independent rect. 10 4
71 330.08 humidity 70 1440 > th dose independent rect. 9 6
77 330.19 humidity 70 720 > th dose dependent rect. 10 16
85 330.55 humidity 70 1440 < th dose independent rect. 18 22
103 331.18 humidity 70 1440 < th dose independent rect. 10 4
117 331.58 humidity 60 1440 > th dose dependent rect. 6 10
118 331.62 humidity 60 720 > th dose dependent rect. 13 13
122 331.71 humidity 60 1440 > th dose dependent sin 0 NA
153 332.52 humidity 70 720 > th dose dependent sin 18 NA
174 332.84 humidity 60 720 > th dose dependent sin 16 NA
252 333.90 humidity 60 1440 > th dose dependent rect. 3 19
285 334.23 humidity 50 1440 > th dose dependent rect. 13 1
296 334.33 humidity 90 1440 < th dose dependent rect. 3 12
305 334.39 humidity 90 1440 < th dose dependent rect. 20 20
335 334.63 humidity 60 1440 > th dose dependent rect. 19 22
471 335.63 humidity 70 1440 > th dose independent rect. 9 22
478 335.67 humidity 70 1440 > th dose independent rect. 9 20
512 335.83 humidity 90 1440 < th dose dependent rect. 11 3
566 336.19 humidity 60 1440 > th dose dependent no NA NA
667 336.54 humidity 70 1440 > th dose independent no NA NA
703 336.60 humidity 70 1440 < th dose independent rect. 9 22
750 336.76 humidity 90 1440 < th dose dependent sin 2 NA
967 337.69 humidity 90 720 > th dose dependent rect. 20 1
985 337.78 humidity 70 1440 < th dose independent no NA NA