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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0400100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cinnamyl alcohol dehydrogenase (EC 1.1.1.195).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.82 (0.0448) R2 : 0.275
β1 : 1.6 (0.173) R2dD : 0.164 R2D : 0.0162
β2 : 0.591 (0.109) R2dC : 0.0479 R2C : 0.057
β3 : 1.56 (0.163) R2dE : 0.192 R2E : 0.0509
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.444 (0.102) R2dN8 : 0.0479 R2N8 : -0.0486
σ : 0.82
deviance : 310.1
__
_____
C
peak time of C : 14.6
E
wheather : temperature
threshold : 24.59
memory length : 4218
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
307.45 0.824 3.76 2.13 0.588 1.66 0.368 -1.99 0.563 14.5 24.75 4240 -- --
309.88 0.82 3.83 1.58 0.583 1.56 0.221 -- 0.439 14.3 24.57 4234 -- --
307.72 0.817 3.76 2.13 0.588 1.66 -- -1.88 0.587 14.5 24.7 4240 -- --
310.1 0.82 3.82 1.6 0.591 1.56 -- -- 0.444 14.6 24.59 4218 -- --
326.86 0.842 3.75 2.13 -- 1.78 -- -1.82 0.601 -- 24.7 4161 -- --
371.9 0.904 3.91 0.966 0.727 -- 0.351 -- 0.0521 14.4 -- -- -- --
372.31 0.904 3.91 0.975 0.731 -- -- -- 0.0545 14.5 -- -- -- --
329.02 0.845 3.82 1.62 -- 1.68 -- -- 0.466 -- 24.59 4114 -- --
367.57 0.893 3.89 -- 0.605 1.01 -- -- 0.146 14.5 24.67 4163 -- --
403.71 0.939 3.92 0.944 -- -- -- -- 0.0364 -- -- -- -- --
397.39 0.933 3.94 -- 0.712 -- -- -- -0.0541 14.5 -- -- -- --
388.22 0.918 3.89 -- -- 1.13 -- -- 0.167 -- 24.6 4041 -- --
427.23 0.965 3.94 -- -- -- -- -- -0.0684 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 300.60 temperature 20 10 > th dose dependent rect. 15 23
4 301.85 temperature 10 270 > th dose dependent rect. 2 22
7 302.43 temperature 25 4320 < th dose independent rect. 17 8
12 302.87 temperature 25 4320 > th dose independent rect. 17 8
15 303.12 temperature 20 270 > th dose dependent rect. 17 16
20 303.34 temperature 25 4320 < th dose independent sin 14 NA
46 304.00 temperature 25 4320 > th dose independent sin 14 NA
79 304.61 temperature 25 4320 < th dose independent rect. 15 17
80 304.61 temperature 20 4320 > th dose dependent rect. 24 1
105 305.01 temperature 25 4320 > th dose independent rect. 17 16
119 305.15 temperature 25 4320 > th dose independent rect. 15 17
171 305.84 temperature 20 4320 > th dose dependent rect. 20 6
172 305.84 temperature 20 4320 > th dose dependent rect. 20 8
177 305.88 temperature 20 30 > th dose dependent sin 9 NA
277 306.66 temperature 20 4320 > th dose dependent rect. 20 1
299 306.82 temperature 20 270 > th dose dependent rect. 15 19
313 306.95 temperature 20 4320 > th dose dependent rect. 3 1
333 307.05 temperature 30 30 < th dose dependent rect. 7 23
446 307.95 temperature 20 4320 > th dose dependent sin 11 NA
457 308.05 temperature 30 4320 < th dose dependent rect. 24 1
475 308.16 temperature 20 10 > th dose dependent rect. 2 23
498 308.34 temperature 25 4320 < th dose independent rect. 6 23
507 308.46 temperature 25 4320 < th dose independent no NA NA
527 308.61 temperature 15 10 > th dose dependent no NA NA
535 308.65 temperature 25 4320 > th dose independent rect. 6 23
541 308.71 temperature 10 4320 > th dose dependent rect. 21 1
543 308.71 temperature 10 4320 > th dose dependent rect. 20 6
552 308.77 temperature 25 4320 > th dose independent no NA NA
558 308.78 temperature 30 4320 < th dose dependent rect. 20 6
566 308.81 temperature 30 4320 < th dose dependent rect. 20 2
590 308.92 temperature 25 4320 > th dose independent rect. 3 23
643 309.16 temperature 30 10 < th dose dependent rect. 9 21
661 309.23 temperature 20 10 > th dose dependent rect. 13 23
896 310.06 temperature 20 10 > th dose dependent rect. 4 23
963 310.31 temperature 20 10 > th dose dependent rect. 17 23