BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0400100 Os09g0400100|AK108849
         (164 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0400100  Similar to Cinnamyl alcohol dehydrogenase (EC ...   211   2e-55
Os09g0400200  Similar to Cinnamyl alcohol dehydrogenase (EC ...   192   1e-49

>Os09g0400100 Similar to Cinnamyl alcohol dehydrogenase (EC 1.1.1.195)
          Length = 164

 Score =  211 bits (537), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/143 (80%), Positives = 115/143 (80%)

Query: 1   MAWQSLMPPTQLPVMPFPPGTMAYAGSSSGLVGAPTNTICAIGFISANSGATGCHADTVL 60
           MAWQSLMPPTQLPVMPFPPGTMAYAGSSSGLVGAPTNTICAIGFISANSGATGCHADTVL
Sbjct: 1   MAWQSLMPPTQLPVMPFPPGTMAYAGSSSGLVGAPTNTICAIGFISANSGATGCHADTVL 60

Query: 61  RIPSMVPAAAAIWPASRLTXXXXXXXXXXXXXXFPGDVLMTVTRIPNALANLXXXXXXXX 120
           RIPSMVPAAAAIWPASRLT              FPGDVLMTVTRIPNALANL        
Sbjct: 61  RIPSMVPAAAAIWPASRLTRNSSAPRCSSASRRFPGDVLMTVTRIPNALANLTATWPSPP 120

Query: 121 XXXXXXCFPGAFSPWITIGLYTV 143
                 CFPGAFSPWITIGLYTV
Sbjct: 121 RPTTPTCFPGAFSPWITIGLYTV 143



>Os09g0400200 Similar to Cinnamyl alcohol dehydrogenase (EC 1.1.1.195)
          Length = 180

 Score =  192 bits (487), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 109/143 (76%), Positives = 109/143 (76%)

Query: 1   MAWQSLMPPTQLPVMPFPPGTMAYAGSSSGLVGAPTNTICAIGFISANSGATGCHADTVL 60
           MAWQSLMPPTQLPVMPFPPGTMAYAGSSSGLVG PTNTICAIGFIS NSGA GC ADTVL
Sbjct: 17  MAWQSLMPPTQLPVMPFPPGTMAYAGSSSGLVGPPTNTICAIGFISENSGAIGCQADTVL 76

Query: 61  RIPSMVPAAAAIWPASRLTXXXXXXXXXXXXXXFPGDVLMTVTRIPNALANLXXXXXXXX 120
           RIPSMV AAAAIWPASRLT              FPGDVLMTVTRIPNALANL        
Sbjct: 77  RIPSMVAAAAAIWPASRLTRNSSAPRCSSASCRFPGDVLMTVTRIPNALANLTATWPSPP 136

Query: 121 XXXXXXCFPGAFSPWITIGLYTV 143
                 CFPGAF PWITIGLYTV
Sbjct: 137 RPTTPTCFPGAFRPWITIGLYTV 159



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.135    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,756,328
Number of extensions: 176046
Number of successful extensions: 555
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 2
Length of query: 164
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 71
Effective length of database: 12,179,899
Effective search space: 864772829
Effective search space used: 864772829
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)