BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0380200 Os09g0380200|AK058363
(145 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0380200 Conserved hypothetical protein 264 2e-71
Os08g0416900 Conserved hypothetical protein 190 4e-49
Os03g0255200 Heat shock protein DnaJ, N-terminal domain con... 64 3e-11
>Os09g0380200 Conserved hypothetical protein
Length = 145
Score = 264 bits (674), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 132/145 (91%), Positives = 132/145 (91%)
Query: 1 MKSYQQRXXXXXXXXXXXXXRVEESPSWVKALLGYFEVPQMDIISRRLFFFAFIAGWSIA 60
MKSYQQR RVEESPSWVKALLGYFEVPQMDIISRRLFFFAFIAGWSIA
Sbjct: 1 MKSYQQRKKTKINLKTKLKKRVEESPSWVKALLGYFEVPQMDIISRRLFFFAFIAGWSIA 60
Query: 61 TSAENGPAFQLAISLFSCIYFLNDKMKNLMRASTTGFGVLVGGWIIGSLLVPLIPTFIIP 120
TSAENGPAFQLAISLFSCIYFLNDKMKNLMRASTTGFGVLVGGWIIGSLLVPLIPTFIIP
Sbjct: 61 TSAENGPAFQLAISLFSCIYFLNDKMKNLMRASTTGFGVLVGGWIIGSLLVPLIPTFIIP 120
Query: 121 PSWSLELLTSLVAYVFLFLGCTFLK 145
PSWSLELLTSLVAYVFLFLGCTFLK
Sbjct: 121 PSWSLELLTSLVAYVFLFLGCTFLK 145
>Os08g0416900 Conserved hypothetical protein
Length = 114
Score = 190 bits (482), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/114 (80%), Positives = 102/114 (89%)
Query: 32 LLGYFEVPQMDIISRRLFFFAFIAGWSIATSAENGPAFQLAISLFSCIYFLNDKMKNLMR 91
+LG+FEVP +IISRRL FAFIAGWSI TSAE GP FQLA+SL SCIYFLN+KMKNL R
Sbjct: 1 MLGFFEVPSAEIISRRLALFAFIAGWSIVTSAETGPTFQLALSLVSCIYFLNEKMKNLSR 60
Query: 92 ASTTGFGVLVGGWIIGSLLVPLIPTFIIPPSWSLELLTSLVAYVFLFLGCTFLK 145
AS TGFGV VGGWI+GSLLVP+IPTF IPP+WS+ELL+SLVAYVFLFLGCTFLK
Sbjct: 61 ASMTGFGVFVGGWIVGSLLVPVIPTFAIPPTWSIELLSSLVAYVFLFLGCTFLK 114
>Os03g0255200 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 282
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 29 VKALLGYFEVPQMDIISRRLFFFAFIAGWSIATSAENGPAFQLAISLFSCIYFLNDKMKN 88
VKA+ G F+ P +I + F + ++ E GP Q+AIS + IYF+ ++K+
Sbjct: 166 VKAIQGRFQTPSSKVIWQTAITFVLLGVLTLVFPTEEGPTLQVAISCAANIYFIYQRLKS 225
Query: 89 LMRASTTGFGVLVGGWIIGS-LLVPLIPTFIIPPSWSLELLTSLVAYVFLFLGCTFLK 145
R GFG W + + L+V +IP I+P +LE+ T+ V Y LF+ FLK
Sbjct: 226 GWRTFFYGFGSFFASWFLATFLMVSVIPP-ILPGPRNLEVSTACVTYALLFVSSAFLK 282
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.142 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,239,057
Number of extensions: 142877
Number of successful extensions: 374
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 3
Length of query: 145
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 54
Effective length of database: 12,284,327
Effective search space: 663353658
Effective search space used: 663353658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 151 (62.8 bits)