Os09g0380200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0380200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.49 | 0.4 | 10.8 | 1.43 | 1.76 | 0.806 | -0.279 | 3.83 | 0.0679 | 20.3 | 39.21 | 257 | -- | -- |
| 84.03 | 0.427 | 10.8 | 1.4 | 1.74 | 0.653 | -0.647 | -- | 0.0585 | 20.4 | 39.62 | 325 | -- | -- |
| 72.62 | 0.397 | 10.8 | 1.44 | 1.76 | 0.778 | -- | 3.69 | 0.0641 | 20.3 | 37 | 248 | -- | -- |
| 84.01 | 0.427 | 10.8 | 1.39 | 1.72 | 0.577 | -- | -- | 0.0627 | 20.5 | 16.1 | 324 | -- | -- |
| 185.12 | 0.634 | 10.6 | 1.52 | -- | 1.31 | -- | 4.07 | -0.0145 | -- | 0.3186 | 827 | -- | -- |
| 88.02 | 0.44 | 10.8 | 1.39 | 1.79 | -- | -0.438 | -- | 0.104 | 20 | -- | -- | -- | -- |
| 88.59 | 0.441 | 10.8 | 1.4 | 1.79 | -- | -- | -- | 0.104 | 19.9 | -- | -- | -- | -- |
| 152.68 | 0.575 | 10.8 | 1.27 | -- | 1.75 | -- | -- | -0.113 | -- | -0.06681 | 856 | -- | -- |
| 133.74 | 0.539 | 10.8 | -- | 1.64 | 0.647 | -- | -- | -0.0694 | 20.6 | 20 | 400 | -- | -- |
| 264.05 | 0.759 | 10.7 | 1.39 | -- | -- | -- | -- | 0.0802 | -- | -- | -- | -- | -- |
| 140.57 | 0.555 | 10.8 | -- | 1.79 | -- | -- | -- | -0.0527 | 20 | -- | -- | -- | -- |
| 194.61 | 0.65 | 10.8 | -- | -- | 1.82 | -- | -- | -0.263 | -- | -8.285 | 867 | -- | -- |
| 314.69 | 0.828 | 10.7 | -- | -- | -- | -- | -- | -0.0736 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.79 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 2 | 69.03 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 21 | 70.46 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 26 | 70.64 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 37 | 70.94 | radiation | 40 | 270 | > th | dose dependent | sin | 8 | NA |
| 50 | 71.23 | temperature | 25 | 90 | > th | dose dependent | sin | 1 | NA |
| 55 | 71.27 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 8 |
| 66 | 71.57 | radiation | 40 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 98 | 71.93 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 153 | 72.45 | radiation | 40 | 270 | < th | dose independent | sin | 6 | NA |
| 210 | 72.62 | radiation | 40 | 270 | > th | dose dependent | no | NA | NA |
| 398 | 72.95 | radiation | 40 | 270 | > th | dose independent | sin | 7 | NA |
| 481 | 73.17 | radiation | 40 | 270 | > th | dose independent | rect. | 14 | 22 |
| 515 | 73.31 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 516 | 73.32 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 769 | 73.87 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 23 |
| 774 | 73.91 | radiation | 40 | 270 | < th | dose independent | no | NA | NA |
| 785 | 73.95 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 795 | 74.02 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 797 | 74.03 | radiation | 40 | 270 | > th | dose independent | rect. | 8 | 4 |
| 846 | 74.10 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 947 | 74.25 | radiation | 40 | 270 | > th | dose independent | no | NA | NA |