BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0380200 Os09g0380200|AK058363
         (145 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23040.1  | chr5:7729465-7730930 REVERSE LENGTH=259            181   1e-46
AT3G51140.1  | chr3:18998182-18999437 FORWARD LENGTH=279           55   9e-09

>AT5G23040.1 | chr5:7729465-7730930 REVERSE LENGTH=259
          Length = 258

 Score =  181 bits (458), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/145 (60%), Positives = 106/145 (73%)

Query: 1   MKSYQQRXXXXXXXXXXXXXRVEESPSWVKALLGYFEVPQMDIISRRLFFFAFIAGWSIA 60
           M S+ +R             +VEESP W+KALL + E+P MD I RRLF FAF+ GWSI 
Sbjct: 114 MSSFIRRKKTKINLKSKLKKKVEESPPWLKALLDFVEMPPMDTIFRRLFLFAFMGGWSIM 173

Query: 61  TSAENGPAFQLAISLFSCIYFLNDKMKNLMRASTTGFGVLVGGWIIGSLLVPLIPTFIIP 120
            SAE GPAFQ+A+SL +C+YFLN+K K+L RA   G G LV GW  GSL++P+IPTF+I 
Sbjct: 174 NSAEGGPAFQVAVSLAACVYFLNEKTKSLGRACLIGIGALVAGWFCGSLIIPMIPTFLIQ 233

Query: 121 PSWSLELLTSLVAYVFLFLGCTFLK 145
           P+W+LELLTSLVAYVFLFL CTFLK
Sbjct: 234 PTWTLELLTSLVAYVFLFLSCTFLK 258



>AT3G51140.1 | chr3:18998182-18999437 FORWARD LENGTH=279
          Length = 278

 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 62/111 (55%), Gaps = 2/111 (1%)

Query: 36  FEVPQMDIISRRLFFFAFIAGWSIATSAENGPAFQLAISLFSCIYFLNDKMKNLMRASTT 95
           F+ P   ++ +    FA +   ++    E GP  Q+ +SL +  YF++ +++  +     
Sbjct: 169 FQTPPNAVLVKTAVTFAVLGVLTVLFPTEEGPTLQVLLSLIATFYFIHQRLQKKLWTFLY 228

Query: 96  GFGVLVGGWIIGS-LLVPLIPTFIIPPSWSLELLTSLVAYVFLFLGCTFLK 145
           G G  +  W++G+ L+V +IP FI  P    E+++SL++YV L++  ++L+
Sbjct: 229 GAGAFIFSWLVGTFLMVSVIPPFIKGPR-GFEVMSSLLSYVLLWVASSYLR 278



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.142    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,788,450
Number of extensions: 99613
Number of successful extensions: 344
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 2
Length of query: 145
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 56
Effective length of database: 8,666,545
Effective search space: 485326520
Effective search space used: 485326520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 107 (45.8 bits)