Os03g0255200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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Os03g0255200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.27 | 0.413 | 8.13 | 0.653 | 0.575 | 1.16 | 0.256 | 2.21 | -0.241 | 19.7 | 24.73 | 82 | -- | -- |
| 79.44 | 0.415 | 8.16 | 0.376 | 0.562 | 1.34 | 0.295 | -- | -0.306 | 19.8 | 24.92 | 91 | -- | -- |
| 77.42 | 0.41 | 8.13 | 0.642 | 0.576 | 1.18 | -- | 2.25 | -0.234 | 19.8 | 24.9 | 78 | -- | -- |
| 79.53 | 0.415 | 8.17 | 0.364 | 0.565 | 1.39 | -- | -- | -0.309 | 20.1 | 24.93 | 79 | -- | -- |
| 87.02 | 0.434 | 8.14 | 0.537 | -- | 1.44 | -- | 1.73 | -0.313 | -- | 24.21 | 265 | -- | -- |
| 106.86 | 0.485 | 8.15 | 0.602 | 0.933 | -- | 1.34 | -- | -0.199 | 17.6 | -- | -- | -- | -- |
| 111.15 | 0.494 | 8.14 | 0.594 | 0.944 | -- | -- | -- | -0.194 | 17.8 | -- | -- | -- | -- |
| 88.22 | 0.437 | 8.16 | 0.316 | -- | 1.55 | -- | -- | -0.365 | -- | 24.3 | 274 | -- | -- |
| 82.84 | 0.424 | 8.19 | -- | 0.534 | 1.46 | -- | -- | -0.404 | 20.3 | 24.07 | 92 | -- | -- |
| 157.32 | 0.586 | 8.13 | 0.565 | -- | -- | -- | -- | -0.216 | -- | -- | -- | -- | -- |
| 120.46 | 0.513 | 8.16 | -- | 0.934 | -- | -- | -- | -0.26 | 17.8 | -- | -- | -- | -- |
| 90.73 | 0.444 | 8.17 | -- | -- | 1.6 | -- | -- | -0.408 | -- | 24.2 | 275 | -- | -- |
| 165.75 | 0.601 | 8.14 | -- | -- | -- | -- | -- | -0.279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.12 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 2 | 75.83 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 6 | 76.69 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 22 |
| 8 | 76.72 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 19 |
| 36 | 77.33 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 22 |
| 41 | 77.37 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 74 | 77.65 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 77 | 77.66 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 216 | 78.80 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 217 | 78.80 | temperature | 25 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 238 | 78.93 | temperature | 25 | 90 | > th | dose dependent | sin | 0 | NA |
| 346 | 79.92 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 358 | 80.14 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 440 | 80.89 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 493 | 81.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 609 | 81.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 674 | 82.09 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 13 |
| 706 | 82.29 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 765 | 82.51 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 965 | 83.35 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 15 |