BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0255200 Os03g0255200|AK071625
(282 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G51140.1 | chr3:18998182-18999437 FORWARD LENGTH=279 221 5e-58
AT5G23040.1 | chr5:7729465-7730930 REVERSE LENGTH=259 110 6e-25
>AT3G51140.1 | chr3:18998182-18999437 FORWARD LENGTH=279
Length = 278
Score = 221 bits (562), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 139/219 (63%)
Query: 64 RNTRITPLATASFGDTADSSTPIFPRIHVKDPYQRLGXXXXXXXXXXXXXXNFLINKYAG 123
RN IT +ASFGD AD S IFPRI+VKDPY+RLG NFLI +YAG
Sbjct: 60 RNAMITRAMSASFGDMADDSAAIFPRINVKDPYKRLGISRMASEDEIQGARNFLIQQYAG 119
Query: 124 HKPSVDAIESAHDRIIMQSFSDRXXXXXXXXXXYRELTQSRPVKAIQGRFQTPSSKVIWQ 183
HKPSVDAIESAHD+IIMQ F +R R++ QS+ V + RFQTP + V+ +
Sbjct: 120 HKPSVDAIESAHDKIIMQKFHERKNPKIDISKKVRQVRQSKVVNFVFERFQTPPNAVLVK 179
Query: 184 TAIXXXXXXXXXXXXPTEEGPTLQVAISCAANIYFIYQRLKSGWRTFFYGFGSFFASWFL 243
TA+ PTEEGPTLQV +S A YFI+QRL+ TF YG G+F SW +
Sbjct: 180 TAVTFAVLGVLTVLFPTEEGPTLQVLLSLIATFYFIHQRLQKKLWTFLYGAGAFIFSWLV 239
Query: 244 ATFLMVSVIPPILPGPRNLEVSTACVTYALLFVSSAFLK 282
TFLMVSVIPP + GPR EV ++ ++Y LL+V+S++L+
Sbjct: 240 GTFLMVSVIPPFIKGPRGFEVMSSLLSYVLLWVASSYLR 278
>AT5G23040.1 | chr5:7729465-7730930 REVERSE LENGTH=259
Length = 258
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 101/211 (47%), Gaps = 8/211 (3%)
Query: 79 TADSS----TPIFPRIHVKDPYQRLGXXXXXXXXXXXXXXNFLINKYAGHKPSVDAIESA 134
T DSS P FPR V DPY+RLG NFL+ +YAGH+ S ++IE A
Sbjct: 49 TVDSSYGGNVPTFPRTRVWDPYKRLGVSPYASEEEIWASRNFLLQQYAGHERSEESIEGA 108
Query: 135 HDRIIMQSFSDRXXXXXXXXXXYRELTQSRP--VKAIQGRFQTPSSKVIWQTAIXXXXXX 192
++++M SF R ++ + P +KA+ + P I++
Sbjct: 109 FEKLLMSSFIRRKKTKINLKSKLKKKVEESPPWLKALLDFVEMPPMDTIFRRLFLFAFMG 168
Query: 193 XXXXXXPTEEGPTLQVAISCAANIYFIYQRLKSGWRTFFYGFGSFFASWFLATFLMVSVI 252
E GP QVA+S AA +YF+ ++ KS R G G+ A WF + L++ +I
Sbjct: 169 GWSIMNSAEGGPAFQVAVSLAACVYFLNEKTKSLGRACLIGIGALVAGWFCGS-LIIPMI 227
Query: 253 PPILPGPR-NLEVSTACVTYALLFVSSAFLK 282
P L P LE+ T+ V Y LF+S FLK
Sbjct: 228 PTFLIQPTWTLELLTSLVAYVFLFLSCTFLK 258
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,921,190
Number of extensions: 163249
Number of successful extensions: 431
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 2
Length of query: 282
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 185
Effective length of database: 8,447,217
Effective search space: 1562735145
Effective search space used: 1562735145
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)