BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0255200 Os03g0255200|AK071625
         (282 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0255200  Heat shock protein DnaJ, N-terminal domain con...   493   e-140

>Os03g0255200 Heat shock protein DnaJ, N-terminal domain containing protein
          Length = 282

 Score =  493 bits (1270), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/282 (87%), Positives = 246/282 (87%)

Query: 1   MLAHSLAINPSRAARCPVTSRASSAPLGLVSSLAFSRGRKESVKLFINVDRYTKYSTPFC 60
           MLAHSLAINPSRAARCPVTSRASSAPLGLVSSLAFSRGRKESVKLFINVDRYTKYSTPFC
Sbjct: 1   MLAHSLAINPSRAARCPVTSRASSAPLGLVSSLAFSRGRKESVKLFINVDRYTKYSTPFC 60

Query: 61  YAPRNTRITPLATASFGDTADSSTPIFPRIHVKDPYQRLGXXXXXXXXXXXXXXNFLINK 120
           YAPRNTRITPLATASFGDTADSSTPIFPRIHVKDPYQRLG              NFLINK
Sbjct: 61  YAPRNTRITPLATASFGDTADSSTPIFPRIHVKDPYQRLGISREASEEEIRAARNFLINK 120

Query: 121 YAGHKPSVDAIESAHDRIIMQSFSDRXXXXXXXXXXYRELTQSRPVKAIQGRFQTPSSKV 180
           YAGHKPSVDAIESAHDRIIMQSFSDR          YRELTQSRPVKAIQGRFQTPSSKV
Sbjct: 121 YAGHKPSVDAIESAHDRIIMQSFSDRKKPKVDLKKKYRELTQSRPVKAIQGRFQTPSSKV 180

Query: 181 IWQTAIXXXXXXXXXXXXPTEEGPTLQVAISCAANIYFIYQRLKSGWRTFFYGFGSFFAS 240
           IWQTAI            PTEEGPTLQVAISCAANIYFIYQRLKSGWRTFFYGFGSFFAS
Sbjct: 181 IWQTAITFVLLGVLTLVFPTEEGPTLQVAISCAANIYFIYQRLKSGWRTFFYGFGSFFAS 240

Query: 241 WFLATFLMVSVIPPILPGPRNLEVSTACVTYALLFVSSAFLK 282
           WFLATFLMVSVIPPILPGPRNLEVSTACVTYALLFVSSAFLK
Sbjct: 241 WFLATFLMVSVIPPILPGPRNLEVSTACVTYALLFVSSAFLK 282



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,811,351
Number of extensions: 256720
Number of successful extensions: 766
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 766
Number of HSP's successfully gapped: 2
Length of query: 282
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 182
Effective length of database: 11,814,401
Effective search space: 2150220982
Effective search space used: 2150220982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)