BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0372800 Os09g0372800|AK112000
(337 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0372800 Protein kinase-like domain containing protein 706 0.0
Os09g0237600 Protein kinase domain containing protein 451 e-127
AK110435 142 3e-34
>Os09g0372800 Protein kinase-like domain containing protein
Length = 337
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/337 (100%), Positives = 337/337 (100%)
Query: 1 MGCSISGLNALYDAATGGGDVWINERRFRVLRQIGEGGFAFVYLVREHQASADAARGRSP 60
MGCSISGLNALYDAATGGGDVWINERRFRVLRQIGEGGFAFVYLVREHQASADAARGRSP
Sbjct: 1 MGCSISGLNALYDAATGGGDVWINERRFRVLRQIGEGGFAFVYLVREHQASADAARGRSP 60
Query: 61 SLASEDGTYAMKKVLIQSKEQLDLVKEEIRVSSLFNHPNLLPLLDHAVIAVKNQQGDWNH 120
SLASEDGTYAMKKVLIQSKEQLDLVKEEIRVSSLFNHPNLLPLLDHAVIAVKNQQGDWNH
Sbjct: 61 SLASEDGTYAMKKVLIQSKEQLDLVKEEIRVSSLFNHPNLLPLLDHAVIAVKNQQGDWNH 120
Query: 121 EAYLLFPVYIDGTLFDNAKVMQSRKEFYSTIDVLRIFQQLCEGLKHMHSFDPPYAHNDVK 180
EAYLLFPVYIDGTLFDNAKVMQSRKEFYSTIDVLRIFQQLCEGLKHMHSFDPPYAHNDVK
Sbjct: 121 EAYLLFPVYIDGTLFDNAKVMQSRKEFYSTIDVLRIFQQLCEGLKHMHSFDPPYAHNDVK 180
Query: 181 TGNVLITHRKGQAPLATLMDFGSARPARKEIRSRAEALRLQEWAAEHCSAPYRAPELWDC 240
TGNVLITHRKGQAPLATLMDFGSARPARKEIRSRAEALRLQEWAAEHCSAPYRAPELWDC
Sbjct: 181 TGNVLITHRKGQAPLATLMDFGSARPARKEIRSRAEALRLQEWAAEHCSAPYRAPELWDC 240
Query: 241 PSHADIDERTDIWSLGCTLYAIMYNVSPFEYALGESGGSLQLAIVNCTLKWPAGPSPPYP 300
PSHADIDERTDIWSLGCTLYAIMYNVSPFEYALGESGGSLQLAIVNCTLKWPAGPSPPYP
Sbjct: 241 PSHADIDERTDIWSLGCTLYAIMYNVSPFEYALGESGGSLQLAIVNCTLKWPAGPSPPYP 300
Query: 301 DALHQFITWMLQPQPAMRPHIDDIILHVEKLMEKYSS 337
DALHQFITWMLQPQPAMRPHIDDIILHVEKLMEKYSS
Sbjct: 301 DALHQFITWMLQPQPAMRPHIDDIILHVEKLMEKYSS 337
>Os09g0237600 Protein kinase domain containing protein
Length = 358
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/357 (62%), Positives = 273/357 (76%), Gaps = 21/357 (5%)
Query: 1 MGCSISGLNALYDA-ATGGGDVWINERRFRVLRQIGEGGFA--FVYLVREHQASADAA-- 55
MGCS SGLNALYD GGGD+W+N+ RFRV+R++G+ G A FV+LV+E A+A A+
Sbjct: 1 MGCSFSGLNALYDTVGGGGGDIWVNDYRFRVVRRLGDAGPAGSFVFLVKEVVAAATASDG 60
Query: 56 --------------RGRSPSLASEDGTYAMKKVLIQSKEQLDLVKEEIRVSSLFNHPNLL 101
+G PS S DGTYA+KKVLIQ+++ L+ V++EIRVSS F+HPNLL
Sbjct: 61 TGGAVPGASGLAKKKGIDPSHISADGTYALKKVLIQNEQHLEQVRQEIRVSSQFSHPNLL 120
Query: 102 PLLDHAVIAVKN-QQGDWNHEAYLLFPVYIDGTLFDNAKVMQSRKEFYSTIDVLRIFQQL 160
PLL++A+IAVK Q G NHEAYLLFPV++DGTL D K M +KE++ TI +L+IF+QL
Sbjct: 121 PLLENAIIAVKGVQDGSQNHEAYLLFPVHLDGTLQDINKNMLEKKEYFPTISILQIFRQL 180
Query: 161 CEGLKHMHSFDPPYAHNDVKTGNVLITHRKGQAPLATLMDFGSARPARKEIRSRAEALRL 220
C GLKHMHSFDPPY+HN VK NVLIT RK Q LA LMDF SARPAR IRS+A+A++L
Sbjct: 181 CAGLKHMHSFDPPYSHNGVKPDNVLITQRKDQPHLAILMDFESARPARIAIRSQADAMQL 240
Query: 221 QEWAAEHCSAPYRAPELWDCPSHADIDERTDIWSLGCTLYAIMYNVSPFEYALGESGG-S 279
QEWA+EHCSA YRAPELW+CP+HADIDERTDIWSLGC LYA+MY SPF+Y L E+ G S
Sbjct: 241 QEWASEHCSAHYRAPELWECPTHADIDERTDIWSLGCCLYAMMYGKSPFDYELDEAAGES 300
Query: 280 LQLAIVNCTLKWPAGPSPPYPDALHQFITWMLQPQPAMRPHIDDIILHVEKLMEKYS 336
LQ + +KWP P YPD+L QF+TWMLQP PA+RPHIDDII+HV+KL+ KYS
Sbjct: 301 LQSVTKSAQIKWPTEAGPSYPDSLRQFVTWMLQPHPAVRPHIDDIIIHVDKLIAKYS 357
>AK110435
Length = 688
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 159/319 (49%), Gaps = 52/319 (16%)
Query: 20 DVW-INERRFRVLRQIGEGGFAFVYLVREHQASADAARGRSPSLASEDGTYAMKKVLIQS 78
DV+ IN R+RV++++ EGGFAFV+L + + GR A+K++L+Q
Sbjct: 40 DVYSINGSRYRVVKKLAEGGFAFVFLAEQVET------GRP---------VALKRILVQD 84
Query: 79 KEQLDLVKEEIR-VSSLFNHPNLLPLLDHAVIAVKNQQGDWNHEAYLLFPVYIDGTLFDN 137
E ++++K EI + +L ++P L A N+Q E +L G++ +
Sbjct: 85 DEHMEIIKREIDFLKTLSGKEGIVPFLGAASFRKPNRQ-----EVVVLTEFCPRGSVLN- 138
Query: 138 AKVMQSRKEFYSTIDVLRIFQQLCEGLKHMHSFDPPYAHNDVKTGNVLITHRKGQAPLAT 197
+ Q + + ++L IF+ +C+ + HMHS +PP AH D+K NVL+ G+
Sbjct: 139 -LMYQRERNRMTETEILFIFETVCKAVYHMHSLEPPIAHRDLKVENVLV----GKNGALY 193
Query: 198 LMDFGSARPA-----RKEIRSRAEALRLQEWAAEHCSAPYRAPELWDCPSHADIDERTDI 252
L+DFGSA + IR+ AE + + YRAPE+ D I+E+ D+
Sbjct: 194 LIDFGSATVVTYDTDKPHIRNIAE-----NDINRNTTLLYRAPEMVDLYRKQLINEKVDV 248
Query: 253 WSLGCTLYAIMYNVSPFEYALGESGGSLQLAIVNCTLKWPAGPSPPYPDALHQFITWMLQ 312
W+LGC LY +MY PF+ LG I+N + P PPY +H + ++L
Sbjct: 249 WALGCMLYKMMYYADPFDGKLG---------ILNARYRAPD--FPPYTPKMHDLLKFLLT 297
Query: 313 PQPAMRPHIDDIILHVEKL 331
P RP I D++ EKL
Sbjct: 298 ADPEKRPDICDVL---EKL 313
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,069,077
Number of extensions: 581651
Number of successful extensions: 2674
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2677
Number of HSP's successfully gapped: 3
Length of query: 337
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 236
Effective length of database: 11,762,187
Effective search space: 2775876132
Effective search space used: 2775876132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)