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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0237600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.56 (0.0496) R2 : 0.0785
β1 : -1.11 (0.182) R2dD : 0.0782 R2D : 0.063
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.254 (0.106) R2dN8 : 0.0155 R2N8 : 0.000358
σ : 0.931
deviance : 396.89
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
351.81 0.881 4.47 -0.3 0.0794 0.756 -4.38 -4.71 0.117 11.9 25.2 357 8.28 --
370.97 0.897 4.5 -0.774 0.128 0.943 -1.13 -- 0.01 9.97 24.19 295 8.2 --
363.86 0.888 4.46 -0.326 0.611 1.09 -- -4.38 0.171 22 25.6 881 7.85 --
370.54 0.897 4.43 -0.907 0.248 1.08 -- -- 0.141 18.6 25.53 650 9.6 --
367.98 0.893 4.48 -0.865 -- 0.936 -- -1.01 0.0022 -- 25.63 647 9.71 --
388.4 0.924 4.56 -1.1 0.162 -- -1.72 -- -0.264 6.01 -- -- -- --
388.77 0.923 4.57 -1.12 0.365 -- -- -- -0.262 1.66 -- -- -- --
369.73 0.896 4.51 -0.98 -- 0.881 -- -- -0.0211 -- 25.6 624 10.5 --
391.87 0.922 4.46 -- 0.303 1.15 -- -- 0.15 18.5 25.7 656 9.71 --
396.89 0.931 4.56 -1.11 -- -- -- -- -0.254 -- -- -- -- --
422.05 0.961 4.54 -- 0.345 -- -- -- -0.137 1.56 -- -- -- --
393.66 0.924 4.48 -- -- 1.04 -- -- 0.108 -- 25.7 664 11.2 --
429.33 0.967 4.53 -- -- -- -- -- -0.131 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 348.42 radiation 1.0 1440 > th dose independent rect. 10 3
3 351.67 radiation 1.0 1440 > th dose independent rect. 12 1
5 353.99 temperature 25.0 270 < th dose independent sin 14 NA
8 355.33 temperature 25.0 270 > th dose independent rect. 15 11
11 355.60 temperature 25.0 270 > th dose independent sin 14 NA
19 356.47 temperature 25.0 270 < th dose independent rect. 19 11
20 356.47 temperature 25.0 270 < th dose independent rect. 17 12
22 356.60 atmosphere 1005.0 90 > th dose independent rect. 18 10
23 356.60 humidity 90.0 720 > th dose dependent rect. 20 1
30 356.80 wind 9.0 720 < th dose dependent rect. 24 1
35 357.00 humidity 60.0 30 > th dose independent rect. 12 21
44 357.46 atmosphere 1005.0 10 > th dose independent rect. 18 11
49 357.85 wind 5.0 720 < th dose independent rect. 24 1
52 358.12 temperature 25.0 720 < th dose independent rect. 13 11
66 358.62 temperature 25.0 720 < th dose independent rect. 19 3
68 358.71 radiation 1.0 720 > th dose independent rect. 9 9
69 358.73 wind 3.0 720 < th dose independent rect. 24 4
70 358.75 temperature 25.0 720 < th dose independent rect. 21 1
73 358.78 temperature 20.0 720 > th dose independent rect. 12 1
74 358.79 radiation 1.0 720 > th dose independent rect. 9 20
93 359.02 atmosphere 1005.0 10 < th dose independent rect. 18 13
96 359.12 wind 7.0 4320 > th dose dependent rect. 15 1
97 359.14 temperature 25.0 270 < th dose independent rect. 13 17
101 359.22 temperature 15.0 30 > th dose independent rect. 12 12
102 359.24 temperature 25.0 720 < th dose independent rect. 18 6
115 359.52 atmosphere 1005.0 270 > th dose independent rect. 16 11
117 359.55 temperature 10.0 43200 > th dose independent rect. 10 3
150 359.93 radiation 1.0 4320 < th dose independent rect. 21 8
158 360.17 temperature 15.0 1440 > th dose independent rect. 10 3
160 360.20 precipitation 0.1 720 < th dose independent rect. 24 1
161 360.20 precipitation 0.1 720 < th dose dependent rect. 24 1
174 360.43 precipitation 0.1 30 < th dose independent rect. 24 12
175 360.43 precipitation 0.1 30 < th dose dependent rect. 24 12
183 360.64 temperature 10.0 720 > th dose independent rect. 24 1
184 360.64 temperature 30.0 720 < th dose independent rect. 24 1
185 360.64 humidity 50.0 720 > th dose independent rect. 24 1
188 360.64 atmosphere 995.0 720 > th dose independent rect. 24 1
189 360.64 radiation 1.0 720 < th dose independent rect. 24 1
194 360.64 temperature 10.0 720 > th dose independent rect. 1 23
195 360.64 radiation 1.0 720 < th dose dependent rect. 24 1
202 360.68 radiation 1.0 1440 < th dose dependent rect. 8 8
209 360.79 temperature 10.0 1440 > th dose independent rect. 1 12
212 360.79 temperature 10.0 1440 > th dose independent rect. 13 12
215 360.79 atmosphere 995.0 1440 > th dose independent rect. 1 12
217 360.83 wind 9.0 4320 > th dose dependent rect. 13 1
219 360.84 temperature 15.0 30 > th dose independent rect. 12 21
222 360.88 wind 7.0 720 < th dose dependent rect. 24 3
224 360.92 humidity 90.0 720 > th dose independent rect. 21 1
226 360.93 precipitation 0.1 720 < th dose independent rect. 12 1
227 360.93 precipitation 0.1 720 < th dose dependent rect. 12 1
228 360.95 humidity 60.0 30 > th dose independent rect. 12 12
233 361.00 atmosphere 995.0 1440 > th dose independent rect. 10 3
234 361.00 temperature 10.0 1440 > th dose independent rect. 13 21
238 361.02 temperature 25.0 90 > th dose independent rect. 20 7
242 361.02 humidity 60.0 30 > th dose independent rect. 12 23
243 361.03 atmosphere 1015.0 30 < th dose independent rect. 24 12
244 361.04 humidity 50.0 30 > th dose dependent rect. 12 21
246 361.05 temperature 10.0 30 > th dose independent rect. 24 12
247 361.05 atmosphere 995.0 30 > th dose independent rect. 24 12
249 361.07 atmosphere 995.0 720 > th dose independent rect. 12 1
250 361.07 atmosphere 1015.0 720 < th dose independent rect. 12 1
251 361.07 temperature 10.0 720 > th dose independent rect. 13 23
270 361.27 humidity 70.0 14400 > th dose independent rect. 21 9
274 361.32 wind 7.0 4320 > th dose dependent rect. 13 3
277 361.34 radiation 1.0 30 > th dose independent rect. 9 3
280 361.37 atmosphere 1015.0 30 < th dose dependent rect. 9 3
282 361.40 temperature 10.0 30 > th dose independent rect. 9 3
284 361.40 atmosphere 995.0 30 > th dose independent rect. 9 3
285 361.40 atmosphere 1015.0 30 < th dose independent rect. 9 3
286 361.40 precipitation 0.1 30 < th dose independent rect. 9 3
288 361.40 precipitation 0.1 30 < th dose dependent rect. 9 3
290 361.41 wind 9.0 30 < th dose independent rect. 12 12
294 361.48 wind 9.0 30 < th dose independent rect. 12 21
297 361.50 radiation 1.0 720 < th dose dependent rect. 11 13
299 361.54 atmosphere 1005.0 10 > th dose independent rect. 15 14
300 361.56 wind 9.0 720 < th dose independent rect. 12 1
306 361.59 precipitation 0.1 30 < th dose independent rect. 12 12
307 361.59 precipitation 0.1 30 < th dose dependent rect. 12 12
308 361.60 wind 9.0 4320 > th dose independent rect. 15 1
329 361.71 radiation 1.0 1440 < th dose independent rect. 8 7
347 361.82 radiation 1.0 1440 < th dose dependent rect. 13 3
358 361.95 atmosphere 1005.0 270 < th dose independent rect. 17 12
360 362.01 wind 9.0 30 < th dose independent rect. 9 3
361 362.03 radiation 1.0 720 < th dose independent rect. 11 13
365 362.05 wind 1.0 30 > th dose independent rect. 9 3
367 362.05 precipitation 0.1 30 < th dose independent rect. 12 21
368 362.05 precipitation 0.1 30 < th dose dependent rect. 12 21
370 362.06 radiation 1.0 720 < th dose dependent rect. 7 17
375 362.11 wind 9.0 4320 > th dose independent rect. 13 1
378 362.12 radiation 1.0 1440 < th dose independent rect. 8 5
379 362.12 wind 9.0 30 < th dose independent rect. 24 12
381 362.12 radiation 1.0 1440 < th dose dependent rect. 8 5
384 362.15 atmosphere 995.0 30 > th dose independent rect. 12 21
389 362.21 radiation 1.0 1440 < th dose independent rect. 9 2
397 362.21 radiation 1.0 1440 < th dose dependent rect. 9 2
399 362.22 atmosphere 1005.0 270 < th dose independent rect. 15 14
404 362.24 wind 9.0 270 < th dose dependent rect. 21 15
432 362.38 wind 3.0 30 < th dose independent rect. 9 8
433 362.39 humidity 90.0 30 < th dose independent rect. 9 3
434 362.39 precipitation 0.1 720 < th dose independent rect. 13 23
435 362.39 precipitation 0.1 720 < th dose dependent rect. 13 23
438 362.43 radiation 1.0 4320 < th dose independent rect. 23 6
442 362.45 wind 1.0 720 > th dose independent rect. 12 1
446 362.48 radiation 1.0 720 < th dose independent rect. 13 11
450 362.50 atmosphere 1015.0 270 < th dose dependent rect. 9 1
451 362.51 temperature 10.0 43200 > th dose independent rect. 10 8
474 362.72 wind 3.0 720 < th dose independent rect. 2 1
475 362.73 humidity 50.0 30 > th dose dependent rect. 12 23
478 362.76 atmosphere 1005.0 10 < th dose independent sin 12 NA
479 362.76 atmosphere 1005.0 720 < th dose independent rect. 20 1
494 362.85 wind 1.0 30 > th dose dependent rect. 12 21
498 362.93 radiation 1.0 1440 > th dose independent rect. 14 1
507 362.97 atmosphere 995.0 30 > th dose independent rect. 12 12
519 363.02 wind 9.0 4320 < th dose independent rect. 13 1
525 363.06 temperature 10.0 43200 > th dose independent rect. 10 5
532 363.07 humidity 80.0 720 > th dose dependent rect. 12 12
543 363.16 radiation 1.0 4320 < th dose independent rect. 19 10
559 363.27 humidity 50.0 720 > th dose independent rect. 12 1
564 363.29 radiation 1.0 1440 < th dose independent rect. 13 2
570 363.29 temperature 25.0 720 > th dose dependent rect. 16 9
579 363.34 wind 9.0 30 < th dose dependent rect. 9 3
584 363.36 wind 3.0 30 < th dose independent rect. 11 6
586 363.37 wind 1.0 10 > th dose independent rect. 12 12
588 363.38 wind 1.0 30 > th dose independent rect. 12 21
593 363.39 humidity 80.0 270 > th dose independent rect. 8 1
594 363.39 temperature 10.0 1440 > th dose independent rect. 6 4
597 363.39 atmosphere 995.0 1440 > th dose independent rect. 6 4
598 363.39 atmosphere 1015.0 1440 < th dose independent rect. 6 4
600 363.39 temperature 10.0 1440 > th dose independent rect. 10 20
605 363.40 atmosphere 1015.0 10 < th dose dependent rect. 9 5
608 363.42 wind 7.0 4320 > th dose independent rect. 13 3
615 363.46 atmosphere 1005.0 720 < th dose independent rect. 19 3
625 363.52 temperature 25.0 90 < th dose independent rect. 20 6
629 363.53 wind 5.0 30 < th dose dependent rect. 9 8
631 363.55 radiation 1.0 720 > th dose independent sin 19 NA
659 363.68 radiation 10.0 1440 < th dose dependent rect. 21 8
672 363.73 temperature 10.0 30 > th dose dependent rect. 9 3
698 363.83 atmosphere 1010.0 270 < th dose dependent rect. 8 3
704 363.89 humidity 90.0 30 < th dose independent rect. 9 8
717 363.93 temperature 10.0 30 > th dose dependent rect. 24 12
721 363.96 wind 9.0 720 < th dose independent rect. 13 23
728 363.99 humidity 90.0 720 < th dose independent rect. 12 1
738 364.03 radiation 1.0 720 < th dose independent rect. 3 21
739 364.04 wind 7.0 4320 < th dose independent rect. 13 3
743 364.06 wind 3.0 270 < th dose dependent rect. 9 1
746 364.08 humidity 90.0 90 < th dose independent rect. 9 19
748 364.09 wind 7.0 4320 > th dose independent rect. 13 5
751 364.11 temperature 30.0 30 < th dose independent rect. 12 21
752 364.11 atmosphere 1015.0 30 < th dose independent rect. 12 21
754 364.12 wind 1.0 270 > th dose independent rect. 4 1
779 364.19 humidity 70.0 10 > th dose independent rect. 14 19
786 364.23 radiation 1.0 720 > th dose independent rect. 15 14
790 364.26 radiation 40.0 90 < th dose independent rect. 9 3
798 364.28 temperature 25.0 720 > th dose dependent sin 14 NA
807 364.34 radiation 1.0 720 > th dose independent rect. 15 4
833 364.40 humidity 60.0 14400 > th dose independent rect. 21 1
852 364.46 atmosphere 1005.0 10 < th dose independent rect. 9 5
876 364.54 atmosphere 1005.0 270 < th dose independent sin 14 NA
880 364.55 humidity 90.0 10 > th dose dependent rect. 5 21
888 364.58 precipitation 0.1 1440 < th dose independent rect. 10 3
889 364.58 wind 7.0 4320 < th dose independent rect. 13 5
891 364.58 precipitation 0.1 1440 < th dose dependent rect. 10 3
893 364.59 radiation 1.0 720 < th dose independent rect. 1 23
900 364.61 humidity 50.0 720 > th dose dependent rect. 19 5
925 364.74 atmosphere 1015.0 30 < th dose independent rect. 12 12
927 364.74 humidity 50.0 30 > th dose dependent rect. 12 12
932 364.75 precipitation 0.1 720 < th dose independent rect. 21 16
934 364.75 precipitation 0.1 720 < th dose dependent rect. 21 16
945 364.78 radiation 30.0 1440 < th dose dependent rect. 19 10
954 364.82 temperature 15.0 1440 > th dose independent rect. 10 8
963 364.86 radiation 1.0 4320 < th dose independent rect. 1 4
970 364.89 precipitation 0.1 720 < th dose independent rect. 10 14
974 364.89 precipitation 0.1 720 < th dose dependent rect. 10 14
980 364.92 temperature 25.0 90 > th dose dependent rect. 20 7
991 364.96 atmosphere 1005.0 10 > th dose independent sin 13 NA