BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0237600 Os09g0237600|AK112084
(358 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0237600 Protein kinase domain containing protein 713 0.0
Os09g0372800 Protein kinase-like domain containing protein 445 e-125
AK110435 101 8e-22
>Os09g0237600 Protein kinase domain containing protein
Length = 358
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/358 (95%), Positives = 343/358 (95%)
Query: 1 MGCSFSGLNALYDTVGGGGGDIWVNDYRFRVVRRLGDAGPAGSFVFLVKEXXXXXXXXXX 60
MGCSFSGLNALYDTVGGGGGDIWVNDYRFRVVRRLGDAGPAGSFVFLVKE
Sbjct: 1 MGCSFSGLNALYDTVGGGGGDIWVNDYRFRVVRRLGDAGPAGSFVFLVKEVVAAATASDG 60
Query: 61 XXXXXPGASGLAKKKGIDPSHISADGTYALKKVLIQNEQHLEQVRQEIRVSSQFSHPNLL 120
PGASGLAKKKGIDPSHISADGTYALKKVLIQNEQHLEQVRQEIRVSSQFSHPNLL
Sbjct: 61 TGGAVPGASGLAKKKGIDPSHISADGTYALKKVLIQNEQHLEQVRQEIRVSSQFSHPNLL 120
Query: 121 PLLENAIIAVKGVQDGSQNHEAYLLFPVHLDGTLQDINKNMLEKKEYFPTISILQIFRQL 180
PLLENAIIAVKGVQDGSQNHEAYLLFPVHLDGTLQDINKNMLEKKEYFPTISILQIFRQL
Sbjct: 121 PLLENAIIAVKGVQDGSQNHEAYLLFPVHLDGTLQDINKNMLEKKEYFPTISILQIFRQL 180
Query: 181 CAGLKHMHSFDPPYSHNGVKPDNVLITQRKDQPHLAILMDFESARPARIAIRSQADAMQL 240
CAGLKHMHSFDPPYSHNGVKPDNVLITQRKDQPHLAILMDFESARPARIAIRSQADAMQL
Sbjct: 181 CAGLKHMHSFDPPYSHNGVKPDNVLITQRKDQPHLAILMDFESARPARIAIRSQADAMQL 240
Query: 241 QEWASEHCSAHYRAPELWECPTHADIDERTDIWSLGCCLYAMMYGKSPFDYELDEAAGES 300
QEWASEHCSAHYRAPELWECPTHADIDERTDIWSLGCCLYAMMYGKSPFDYELDEAAGES
Sbjct: 241 QEWASEHCSAHYRAPELWECPTHADIDERTDIWSLGCCLYAMMYGKSPFDYELDEAAGES 300
Query: 301 LQSVTKSAQIKWPTEAGPSYPDSLRQFVTWMLQPHPAVRPHIDDIIIHVDKLIAKYSI 358
LQSVTKSAQIKWPTEAGPSYPDSLRQFVTWMLQPHPAVRPHIDDIIIHVDKLIAKYSI
Sbjct: 301 LQSVTKSAQIKWPTEAGPSYPDSLRQFVTWMLQPHPAVRPHIDDIIIHVDKLIAKYSI 358
>Os09g0372800 Protein kinase-like domain containing protein
Length = 337
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/357 (62%), Positives = 271/357 (75%), Gaps = 21/357 (5%)
Query: 1 MGCSFSGLNALYDTVGGGGGDIWVNDYRFRVVRRLGDAGPAGSFVFLVKEXXXXXXXXXX 60
MGCS SGLNALYD GGGD+W+N+ RFRV+R++G+ G A FV+LV+E
Sbjct: 1 MGCSISGLNALYDA-ATGGGDVWINERRFRVLRQIGEGGFA--FVYLVREHQ-------- 49
Query: 61 XXXXXPGASGLAKKKGIDPSHISADGTYALKKVLIQNEQHLEQVRQEIRVSSQFSHPNLL 120
AS A + G PS S DGTYA+KKVLIQ+++ L+ V++EIRVSS F+HPNLL
Sbjct: 50 -------ASADAAR-GRSPSLASEDGTYAMKKVLIQSKEQLDLVKEEIRVSSLFNHPNLL 101
Query: 121 PLLENAIIAVKGVQDGSQNHEAYLLFPVHLDGTLQDINKNMLEKKEYFPTISILQIFRQL 180
PLL++A+IAVK Q G NHEAYLLFPV++DGTL D K M +KE++ TI +L+IF+QL
Sbjct: 102 PLLDHAVIAVKN-QQGDWNHEAYLLFPVYIDGTLFDNAKVMQSRKEFYSTIDVLRIFQQL 160
Query: 181 CAGLKHMHSFDPPYSHNGVKPDNVLITQRKDQPHLAILMDFESARPARIAIRSQADAMQL 240
C GLKHMHSFDPPY+HN VK NVLIT RK Q LA LMDF SARPAR IRS+A+A++L
Sbjct: 161 CEGLKHMHSFDPPYAHNDVKTGNVLITHRKGQAPLATLMDFGSARPARKEIRSRAEALRL 220
Query: 241 QEWASEHCSAHYRAPELWECPTHADIDERTDIWSLGCCLYAMMYGKSPFDYELDEAAGES 300
QEWA+EHCSA YRAPELW+CP+HADIDERTDIWSLGC LYA+MY SPF+Y L E+ G S
Sbjct: 221 QEWAAEHCSAPYRAPELWDCPSHADIDERTDIWSLGCTLYAIMYNVSPFEYALGESGG-S 279
Query: 301 LQSVTKSAQIKWPTEAGPSYPDSLRQFVTWMLQPHPAVRPHIDDIIIHVDKLIAKYS 357
LQ + +KWP P YPD+L QF+TWMLQP PA+RPHIDDII+HV+KL+ KYS
Sbjct: 280 LQLAIVNCTLKWPAGPSPPYPDALHQFITWMLQPQPAMRPHIDDIILHVEKLMEKYS 336
>AK110435
Length = 688
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 144/332 (43%), Gaps = 67/332 (20%)
Query: 21 DIW-VNDYRFRVVRRLGDAGPAGSFVFLVKEXXXXXXXXXXXXXXXPGASGLAKKKGIDP 79
D++ +N R+RVV++L + G A FVFL ++
Sbjct: 40 DVYSINGSRYRVVKKLAEGGFA--FVFLAEQ----------------------------- 68
Query: 80 SHISADGTYALKKVLIQNEQHLEQVRQEIRVSSQFS-HPNLLPLLENAIIAVKGVQDGSQ 138
+ ALK++L+Q+++H+E +++EI S ++P L A Q
Sbjct: 69 --VETGRPVALKRILVQDDEHMEIIKREIDFLKTLSGKEGIVPFLGAASFRKPNRQ---- 122
Query: 139 NHEAYLLFPVHLDGTLQDINKNMLEKKEYFPTISILQIFRQLCAGLKHMHSFDPPYSHNG 198
E +L G++ +N ++ IL IF +C + HMHS +PP +H
Sbjct: 123 --EVVVLTEFCPRGSV--LNLMYQRERNRMTETEILFIFETVCKAVYHMHSLEPPIAHRD 178
Query: 199 VKPDNVLITQRKDQPHLAILMDFESARPARIAIRSQADAMQLQEWA----SEHCSAHYRA 254
+K +NVL+ + L+DF SA + D ++ A + + + YRA
Sbjct: 179 LKVENVLVGKN----GALYLIDFGSA----TVVTYDTDKPHIRNIAENDINRNTTLLYRA 230
Query: 255 PELWECPTHADIDERTDIWSLGCCLYAMMYGKSPFDYELDEAAGESLQSVTKSAQIKWPT 314
PE+ + I+E+ D+W+LGC LY MMY PFD +L +A+ + P
Sbjct: 231 PEMVDLYRKQLINEKVDVWALGCMLYKMMYYADPFDGKLG----------ILNARYRAPD 280
Query: 315 EAGPSYPDSLRQFVTWMLQPHPAVRPHIDDII 346
P Y + + ++L P RP I D++
Sbjct: 281 F--PPYTPKMHDLLKFLLTADPEKRPDICDVL 310
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,779,858
Number of extensions: 518240
Number of successful extensions: 2320
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2329
Number of HSP's successfully gapped: 3
Length of query: 358
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 256
Effective length of database: 11,709,973
Effective search space: 2997753088
Effective search space used: 2997753088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)