BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0370500 Os09g0370500|Os09g0370500
(438 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0370500 VQ domain containing protein 364 e-101
Os09g0365000 Disease resistance protein family protein 67 2e-11
>Os09g0370500 VQ domain containing protein
Length = 438
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 220/384 (57%), Positives = 220/384 (57%)
Query: 55 MYGFQELGSVGTSLQHQQGVQLQPWSAAQFAAGAPSSSSPRVAADAGVAGAHXXXXXXXX 114
MYGFQELGSVGTSLQHQQGVQLQPWSAAQFAAGAPSSSSPRVAADAGVAGAH
Sbjct: 55 MYGFQELGSVGTSLQHQQGVQLQPWSAAQFAAGAPSSSSPRVAADAGVAGAHQQQQQQQQ 114
Query: 115 GDPSSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLTTDTSNFRAMVQEFTGIXXXXXX 174
GDPSSE VLTTDTSNFRAMVQEFTGI
Sbjct: 115 GDPSSEGAGAGAAVAAAPARGSRKRTRASRRAPTTVLTTDTSNFRAMVQEFTGIPSPPFV 174
Query: 175 XXXXXXXXXLRTRFDHLFXXXXXXXXXXXXXXXXXSLPPYLLRPFAQKLXXXXXXXXXXX 234
LRTRFDHLF SLPPYLLRPFAQKL
Sbjct: 175 AGVGAPAASLRTRFDHLFPSPASALRSAAAGDPASSLPPYLLRPFAQKLPTAASPFPPYT 234
Query: 235 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGDTFQLTPAALLR 294
GAGDTFQLTPAALLR
Sbjct: 235 SSSSSTPLSTSTPSSSNLAAANANATTTSTAAATTATSVNPTAAAGAGDTFQLTPAALLR 294
Query: 295 MQHDATSSSGSYLSFPSVLAAASQPMXXXXXXXXXXXXRLHDASPSPSFSEFXXXXXXXX 354
MQHDATSSSGSYLSFPSVLAAASQPM RLHDASPSPSFSEF
Sbjct: 295 MQHDATSSSGSYLSFPSVLAAASQPMFGGFAQGGGGGARLHDASPSPSFSEFLGGGISLT 354
Query: 355 XXXXXMSSDALHHHLPTRNDAHHHGGDELSGVVASGSCKLNYTXXXXXXXXXXXXXXDKP 414
MSSDALHHHLPTRNDAHHHGGDELSGVVASGSCKLNYT DKP
Sbjct: 355 DGGGLMSSDALHHHLPTRNDAHHHGGDELSGVVASGSCKLNYTSHAGAPSSSQAAAADKP 414
Query: 415 PDGSTAAARPARGEGLDPWICTSE 438
PDGSTAAARPARGEGLDPWICTSE
Sbjct: 415 PDGSTAAARPARGEGLDPWICTSE 438
>Os09g0365000 Disease resistance protein family protein
Length = 1137
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 39/73 (53%)
Query: 151 LTTDTSNFRAMVQEFTGIXXXXXXXXXXXXXXXLRTRFDHLFXXXXXXXXXXXXXXXXXS 210
+TTD SNFRAMVQEFTGI LRTRFDHLF S
Sbjct: 57 VTTDPSNFRAMVQEFTGIPSPPFVAGVGAPAASLRTRFDHLFPSPASALRSAAAGDPASS 116
Query: 211 LPPYLLRPFAQKL 223
LPPYLLRP AQKL
Sbjct: 117 LPPYLLRPIAQKL 129
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,570,688
Number of extensions: 259505
Number of successful extensions: 967
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 965
Number of HSP's successfully gapped: 3
Length of query: 438
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 334
Effective length of database: 11,605,545
Effective search space: 3876252030
Effective search space used: 3876252030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)