Os09g0365000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os09g0365000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.01 | 0.352 | 9.14 | 0.849 | 0.436 | -0.754 | 0.0847 | -0.592 | 0.125 | 8.68 | 5.38 | 55 | -- | -- |
| 56.47 | 0.35 | 9.14 | 0.847 | 0.446 | -0.782 | -0.264 | -- | 0.136 | 9.12 | 4.257 | 53 | -- | -- |
| 56.01 | 0.349 | 9.14 | 0.849 | 0.445 | -0.768 | -- | -0.534 | 0.126 | 8.84 | 4.55 | 53 | -- | -- |
| 56.61 | 0.35 | 9.15 | 0.835 | 0.434 | -0.734 | -- | -- | 0.123 | 8.67 | 5.225 | 53 | -- | -- |
| 62.22 | 0.367 | 9.15 | 0.84 | -- | -0.472 | -- | -0.892 | 0.139 | -- | -1.698 | 483 | -- | -- |
| 62.16 | 0.37 | 9.15 | 0.84 | 0.376 | -- | 0.811 | -- | 0.107 | 4.64 | -- | -- | -- | -- |
| 63.75 | 0.374 | 9.16 | 0.836 | 0.388 | -- | -- | -- | 0.103 | 5.14 | -- | -- | -- | -- |
| 63.27 | 0.37 | 9.15 | 0.868 | -- | -0.484 | -- | -- | 0.157 | -- | -4.383 | 580 | -- | -- |
| 74.95 | 0.403 | 9.17 | -- | 0.434 | -0.699 | -- | -- | 0.0267 | 8.3 | 4.927 | 53 | -- | -- |
| 71.65 | 0.396 | 9.16 | 0.85 | -- | -- | -- | -- | 0.113 | -- | -- | -- | -- | -- |
| 82.16 | 0.424 | 9.18 | -- | 0.403 | -- | -- | -- | 0.00992 | 5.07 | -- | -- | -- | -- |
| 83.13 | 0.425 | 9.18 | -- | -- | -0.624 | -- | -- | 0.0369 | -- | 24.65 | 89 | -- | -- |
| 90.69 | 0.445 | 9.18 | -- | -- | -- | -- | -- | 0.0186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.28 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 7 | 51.96 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 13 |
| 90 | 54.34 | radiation | 30.0 | 90 | < th | dose independent | sin | 8 | NA |
| 92 | 54.35 | radiation | 40.0 | 90 | < th | dose dependent | sin | 2 | NA |
| 97 | 54.38 | radiation | 40.0 | 10 | < th | dose dependent | sin | 1 | NA |
| 108 | 54.55 | radiation | 20.0 | 30 | < th | dose independent | sin | 2 | NA |
| 109 | 54.56 | radiation | 40.0 | 30 | < th | dose independent | rect. | 4 | 16 |
| 120 | 54.62 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 124 | 54.67 | humidity | 60.0 | 90 | > th | dose independent | rect. | 4 | 13 |
| 127 | 54.67 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 4 | 13 |
| 161 | 54.88 | radiation | 20.0 | 90 | < th | dose independent | rect. | 23 | 18 |
| 182 | 55.02 | radiation | 40.0 | 90 | < th | dose dependent | sin | 6 | NA |
| 240 | 55.32 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 252 | 55.37 | radiation | 40.0 | 10 | < th | dose dependent | sin | 5 | NA |
| 253 | 55.37 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 255 | 55.38 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 256 | 55.39 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 257 | 55.40 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 4 | 16 |
| 268 | 55.45 | radiation | 1.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 294 | 55.55 | radiation | 20.0 | 10 | < th | dose independent | rect. | 4 | 8 |
| 316 | 55.59 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 345 | 55.68 | radiation | 40.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 352 | 55.70 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 7 | 21 |
| 361 | 55.72 | radiation | 30.0 | 90 | > th | dose independent | sin | 6 | NA |
| 373 | 55.75 | radiation | 30.0 | 90 | > th | dose independent | rect. | 15 | 23 |
| 382 | 55.78 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 7 | 7 |
| 413 | 55.88 | wind | 9.0 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 426 | 55.90 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 447 | 55.94 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 451 | 55.95 | radiation | 40.0 | 30 | < th | dose independent | rect. | 4 | 21 |
| 458 | 55.97 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 462 | 55.98 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 12 | 5 |
| 475 | 56.01 | radiation | 30.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 485 | 56.02 | radiation | 30.0 | 90 | > th | dose independent | rect. | 15 | 21 |
| 509 | 56.04 | temperature | 30.0 | 90 | < th | dose independent | rect. | 17 | 11 |
| 511 | 56.04 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 512 | 56.04 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 523 | 56.07 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 3 |
| 527 | 56.07 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 548 | 56.10 | radiation | 40.0 | 30 | < th | dose independent | rect. | 23 | 23 |
| 556 | 56.11 | radiation | 20.0 | 30 | < th | dose independent | rect. | 23 | 23 |
| 564 | 56.13 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 566 | 56.13 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 569 | 56.13 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 573 | 56.13 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 578 | 56.13 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 579 | 56.13 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 581 | 56.13 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 585 | 56.13 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 591 | 56.13 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 17 | 21 |
| 592 | 56.14 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 595 | 56.14 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 596 | 56.14 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 598 | 56.14 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 610 | 56.16 | wind | 7.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 614 | 56.16 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 618 | 56.16 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 665 | 56.20 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 667 | 56.20 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 668 | 56.20 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 671 | 56.20 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 672 | 56.20 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 674 | 56.20 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 679 | 56.20 | radiation | 30.0 | 90 | > th | dose independent | rect. | 8 | 4 |
| 682 | 56.20 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 725 | 56.23 | wind | 5.0 | 90 | < th | dose independent | rect. | 4 | 3 |
| 745 | 56.26 | radiation | 20.0 | 10 | < th | dose independent | rect. | 23 | 15 |
| 750 | 56.26 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 10 | 7 |
| 756 | 56.27 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 766 | 56.28 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 803 | 56.33 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 3 |
| 809 | 56.33 | radiation | 30.0 | 90 | < th | dose independent | rect. | 11 | 22 |
| 811 | 56.33 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 813 | 56.33 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 18 | 10 |
| 824 | 56.34 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 5 |
| 842 | 56.37 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 844 | 56.37 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 3 |
| 845 | 56.37 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 847 | 56.37 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 848 | 56.37 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 3 |
| 849 | 56.37 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 3 |
| 851 | 56.37 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 21 |
| 889 | 56.41 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 21 |
| 893 | 56.41 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 904 | 56.43 | humidity | 60.0 | 90 | > th | dose independent | rect. | 17 | 11 |
| 910 | 56.43 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 929 | 56.45 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 10 |
| 932 | 56.45 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 936 | 56.45 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 19 | 10 |
| 938 | 56.45 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 10 |
| 939 | 56.45 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 952 | 56.45 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 976 | 56.47 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 5 |