Os09g0370500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : VQ domain containing protein.
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Os09g0370500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : VQ domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.19 | 0.449 | 10 | 3.97 | 1 | -1.24 | -0.536 | 2.46 | 1 | 5.12 | 20.11 | 688 | -- | -- |
| 95.36 | 0.455 | 10.1 | 3.47 | 0.989 | -1.14 | -1.03 | -- | 0.864 | 5.25 | 18.66 | 663 | -- | -- |
| 91.74 | 0.446 | 9.99 | 4.02 | 0.955 | -1.27 | -- | 2.79 | 1.02 | 5.22 | 20.13 | 634 | -- | -- |
| 97.28 | 0.459 | 10.1 | 3.45 | 1.01 | -1.16 | -- | -- | 0.858 | 5.23 | 17.99 | 667 | -- | -- |
| 116.8 | 0.503 | 9.97 | 4.2 | -- | -2 | -- | 3.84 | 1.15 | -- | 22.51 | 434 | -- | -- |
| 118.28 | 0.51 | 10.1 | 3.14 | 1.3 | -- | -0.741 | -- | 0.646 | 5.9 | -- | -- | -- | -- |
| 119.62 | 0.512 | 10.1 | 3.14 | 1.3 | -- | -- | -- | 0.649 | 5.91 | -- | -- | -- | -- |
| 126.72 | 0.524 | 10.1 | 3.5 | -- | -1.68 | -- | -- | 0.914 | -- | 22.88 | 401 | -- | -- |
| 376.64 | 0.904 | 10.2 | -- | 1.31 | 0.38 | -- | -- | 0.234 | 5.91 | 14.6 | 1199 | -- | -- |
| 206.63 | 0.672 | 10.1 | 3.17 | -- | -- | -- | -- | 0.679 | -- | -- | -- | -- | -- |
| 378.73 | 0.91 | 10.2 | -- | 1.34 | -- | -- | -- | 0.3 | 5.79 | -- | -- | -- | -- |
| 312.57 | 0.823 | 10.3 | -- | -- | 2.03 | -- | -- | -0.282 | -- | -36.4 | 47520 | -- | -- |
| 472.43 | 1.01 | 10.2 | -- | -- | -- | -- | -- | 0.327 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.50 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 8 | 88.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 13 | 89.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 21 | 89.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 26 | 89.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 7 |
| 57 | 90.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 20 |
| 95 | 90.49 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 107 | 90.56 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 156 | 90.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 167 | 90.97 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 185 | 91.09 | wind | 9 | 43200 | > th | dose dependent | sin | 13 | NA |
| 205 | 91.20 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 221 | 91.28 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 228 | 91.32 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 247 | 91.39 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 21 |
| 265 | 91.48 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 282 | 91.54 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 288 | 91.56 | wind | 3 | 43200 | > th | dose dependent | rect. | 2 | 17 |
| 293 | 91.57 | wind | 3 | 43200 | > th | dose dependent | rect. | 4 | 15 |
| 300 | 91.58 | wind | 3 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 317 | 91.61 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 348 | 91.67 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 377 | 91.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 387 | 91.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 409 | 91.80 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 410 | 91.80 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 417 | 91.80 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 22 |
| 419 | 91.81 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 441 | 91.85 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 475 | 91.90 | radiation | 10 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 516 | 91.97 | wind | 3 | 43200 | > th | dose dependent | rect. | 4 | 21 |
| 522 | 91.98 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 11 |
| 531 | 92.00 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 539 | 92.00 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 14 |
| 559 | 92.02 | wind | 1 | 43200 | > th | dose dependent | sin | 1 | NA |
| 597 | 92.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 660 | 92.14 | wind | 3 | 43200 | > th | dose dependent | no | NA | NA |
| 679 | 92.16 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 703 | 92.19 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 710 | 92.20 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 711 | 92.20 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 16 |
| 729 | 92.22 | wind | 5 | 43200 | < th | dose independent | rect. | 2 | 18 |
| 731 | 92.22 | wind | 9 | 43200 | < th | dose dependent | sin | 1 | NA |
| 757 | 92.26 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 817 | 92.34 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 839 | 92.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 840 | 92.36 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 841 | 92.36 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 16 |
| 919 | 92.42 | wind | 3 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 954 | 92.46 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 996 | 92.51 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 10 |