BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0364000 Os09g0364000|AK111875
         (613 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0364000  Zinc finger, CCCH-type domain containing protein   1215   0.0  
AK110626                                                          122   8e-28
Os03g0740700  Protein similar to CwfJ, C-terminal 1 domain c...    84   3e-16

>Os09g0364000 Zinc finger, CCCH-type domain containing protein
          Length = 613

 Score = 1215 bits (3144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/599 (98%), Positives = 590/599 (98%)

Query: 15  RILLAGDANGRLHQLFKRVTSVNQSTGPFHALLCVGQFFSPDAXXXXXXXXXEVADYLEG 74
           RILLAGDANGRLHQLFKRVTSVNQSTGPFHALLCVGQFFSPDA         EVADYLEG
Sbjct: 15  RILLAGDANGRLHQLFKRVTSVNQSTGPFHALLCVGQFFSPDAGDGDGGGGGEVADYLEG 74

Query: 75  RAAVPIPTYFTGDYGPAAPRLLAKAASSARGFSPGGIQICPNLFWLRGSARFTLHGLSVV 134
           RAAVPIPTYFTGDYGPAAPRLLAKAASSARGFSPGGIQICPNLFWLRGSARFTLHGLSVV
Sbjct: 75  RAAVPIPTYFTGDYGPAAPRLLAKAASSARGFSPGGIQICPNLFWLRGSARFTLHGLSVV 134

Query: 135 YLSGRKGPGGPGCYSQDDVDALRALAEEPGIVDLFLTNEWPAGVVNGVDTSNAPSQISDP 194
           YLSGRKGPGGPGCYSQDDVDALRALAEEPGIVDLFLTNEWPAGVVNGVDTSNAPSQISDP
Sbjct: 135 YLSGRKGPGGPGCYSQDDVDALRALAEEPGIVDLFLTNEWPAGVVNGVDTSNAPSQISDP 194

Query: 195 HGYDPVVAELVAEIKPRYHIAGSKGVFYAREPYVSDSAAHVTRFIGLANVGNKEKQKFIH 254
           HGYDPVVAELVAEIKPRYHIAGSKGVFYAREPYVSDSAAHVTRFIGLANVGNKEKQKFIH
Sbjct: 195 HGYDPVVAELVAEIKPRYHIAGSKGVFYAREPYVSDSAAHVTRFIGLANVGNKEKQKFIH 254

Query: 255 AISPTPASTMSSVDIHARPPNTTLSPYISPAKSVPVEETPKRPAEDADLQYWRYDVKKQR 314
           AISPTPASTMSSVDIHARPPNTTLSPYISPAKSVPVEETPKRPAEDADLQYWRYDVKKQR
Sbjct: 255 AISPTPASTMSSVDIHARPPNTTLSPYISPAKSVPVEETPKRPAEDADLQYWRYDVKKQR 314

Query: 315 HGEAGGNRLCFKFTSSGSCPRGSKCNYRHDEEAREHYNRNVCFDFLNKGKCEKGPECRFA 374
           HGEAGGNRLCFKFTSSGSCPRGSKCNYRHDEEAREHYNRNVCFDFLNKGKCEKGPECRFA
Sbjct: 315 HGEAGGNRLCFKFTSSGSCPRGSKCNYRHDEEAREHYNRNVCFDFLNKGKCEKGPECRFA 374

Query: 375 HSLSDEGAVRDTKPRSERRRVESSCWFCLSSPDVESHLVISIGEGYYCALAKGPLVPNHV 434
           HSLSDEGAVRDTKPRSERRRVESSCWFCLSSPDVESHLVISIGEGYYCALAKGPLVPNHV
Sbjct: 375 HSLSDEGAVRDTKPRSERRRVESSCWFCLSSPDVESHLVISIGEGYYCALAKGPLVPNHV 434

Query: 435 LVIPVEHCSSTLKMPVEAEAELGRYKDALAKYFEKQGKIAIYFEWVSQQSRHANLQAVPV 494
           LVIPVEHCSSTLKMPVEAEAELGRYKDALAKYFEKQGKIAIYFEWVSQQSRHANLQAVPV
Sbjct: 435 LVIPVEHCSSTLKMPVEAEAELGRYKDALAKYFEKQGKIAIYFEWVSQQSRHANLQAVPV 494

Query: 495 PLSKASSVKKIFHLAAQRLGFEFSVVNPDGDANRARELLRSECDSKSSLFYVELPEGSVL 554
           PLSKASSVKKIFHLAAQRLGFEFSVVNPDGDANRARELLRSECDSKSSLFYVELPEGSVL
Sbjct: 495 PLSKASSVKKIFHLAAQRLGFEFSVVNPDGDANRARELLRSECDSKSSLFYVELPEGSVL 554

Query: 555 LHLVDSNEKFPAQFGREVLAGLLSMADRADWRNCKVSKEEEIQMVDDFKQGFREFDPAE 613
           LHLVDSNEKFPAQFGREVLAGLLSMADRADWRNCKVSKEEEIQMVDDFKQGFREFDPAE
Sbjct: 555 LHLVDSNEKFPAQFGREVLAGLLSMADRADWRNCKVSKEEEIQMVDDFKQGFREFDPAE 613



>AK110626 
          Length = 713

 Score =  122 bits (306), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 140/521 (26%), Positives = 213/521 (40%), Gaps = 111/521 (21%)

Query: 156 LRALAEEPGIVDLFLTNEWPAGVVNGVDTSNAPSQISDPHGY---DPVVAELVAEIKPRY 212
           L  L + P + DL LTN WPAGV      ++A + + DP       PV+A L A    RY
Sbjct: 219 LEMLQQRPAL-DLLLTNTWPAGVTLFATGADADAGLPDPTARTWGSPVIARLAAHACARY 277

Query: 213 HIAGS------------------KGVFYAREPYVSDSAAH-----------VTRFIGLAN 243
           H A +                   G F+ R PY +D A++           VTRF+ LA 
Sbjct: 278 HFALAPSPDSPDLPVGIQEATLNMGAFWERAPYTTDLASYLPAPVRAPLRSVTRFVSLAT 337

Query: 244 VGNKEKQKFIHAISPTPASTMSSVDIHARPPNTTLSPYISPAKSVPVEETPKRPAEDADL 303
            GN  K+++  A++ TPA    +V +   PPN T SPY  P  +   + T  +PAE+   
Sbjct: 338 FGNSGKRRWFVALNLTPADEQGAVVV---PPNATPSPYAMPKAAKQAKRT--QPAEEE-- 390

Query: 304 QYWRYDVKKQRHGEAGGN--------RLC-FKFTSSGSCPRGSKCNYRHDEEAREHYNRN 354
           Q +R+    ++   A G+        R+C  +     +CP  SK N +    A E     
Sbjct: 391 QNFRFGEAGRKRARADGDAPPPGYVCRICGVEGHFIRACP--SKTNAQPAASAEE----- 443

Query: 355 VCFDFLNKGKCEKGPECRFAHSLSDEGAVRDTKPRSERRRVESSCWFCLSSPDVESHLVI 414
                   GK E         S +  G  R   P        ++CWFCLS+P VE  L++
Sbjct: 444 ------GAGKIELPMGLPSKPSFAQGG--RQMIPVG-----PANCWFCLSNPSVEKQLIV 490

Query: 415 SIGEGYYCALAKGPLV-PN---------HVLVIPVEHCSSTL--KMPVEA---------- 452
           +IG   Y    KGP + P+         H +++P+ H +  L    PV            
Sbjct: 491 TIGSASYLVRPKGPFIHPSVNEIPHTGAHFIIVPLAHVADLLPGSHPVHGGQGDDGEKAS 550

Query: 453 -EAELGRYKDALAKYFEKQGKIAIYFEW----VSQQSRHANLQAVPVPLSKASSVKKIFH 507
             +E+   K A+   + ++G + +  EW    V    R  + Q   + L  +  V +   
Sbjct: 551 IRSEVESTKAAVRAVWAREGHVML--EWTLVRVRTSPRMTHFQTQLLALKSSIYVAQKLD 608

Query: 508 --LAAQRLGFEFSVVNPDGDANRARELL---RSECDSKSSLFYVEL---PEGSVLLHLVD 559
             L AQ    + +V+     ++ ARE      SE        +++L    E   L+ L  
Sbjct: 609 DALEAQANTAKTAVLR----SHAAREYFDQTHSEDRGDDGYLHIKLHAQEEREWLVPLCT 664

Query: 560 SNEKFPAQFGREVLAGLLSMADRADWRNCKVSKEEEIQMVD 600
           S  +FP QF R  LA  L +   ADW+ C    + E +  D
Sbjct: 665 ST-RFPVQFVRATLAAALELPQLADWKACTGDADAEQERHD 704



>Os03g0740700 Protein similar to CwfJ, C-terminal 1 domain containing protein
          Length = 759

 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 115/258 (44%), Gaps = 24/258 (9%)

Query: 370 ECRFAHSLSDEGAVRDTKPRSERRRV------ESSCWFCLSSPDVESHLVISIGEGYYCA 423
           E  F  + S +G  R+     ERR        +  C +C  +P    HLV++IG   Y  
Sbjct: 503 EYDFGDAPSKKGKRRNKDAHEERRSTHWLTTQKERCMYCFENPSRPKHLVVAIGNFTYLM 562

Query: 424 LAK-GPLVPNHVLVIPVEHCSSTLKMPVEAEAELGRYKDALAKYFEKQGKIAIYFEWV-- 480
           L +  P+VP H +++P++H S+T  +      E+  +K  L K F +Q K  ++ E V  
Sbjct: 563 LPQLEPVVPGHCIILPLQHESATRTVDRSVWEEIRNFKKCLLKMFAQQDKDIVFMETVIS 622

Query: 481 -SQQSRHANLQAVPVPLSKASSVKKIFHLAAQRLGFEFS------VVNPDGDANRARELL 533
            ++Q RH  ++ +P+P   +++    F  A      E++      ++   G+       L
Sbjct: 623 LAKQRRHCMIECIPIPSEVSNNAPMYFKKAIDEAEEEWTQHDMKKLIPTKGN-------L 675

Query: 534 RSECDSKSSLFYVELPEGSVLLHLVDSNEKFPAQFGREVLAGLLSMADRADWRNCK-VSK 592
                   + F+VE        H++D   KF A FG  V+ G+L + +    R  +  S 
Sbjct: 676 HQVIPENFAYFHVEFGLDRGFAHVIDDESKFSAGFGLNVIRGMLQLREEDMHRRRRHESM 735

Query: 593 EEEIQMVDDFKQGFREFD 610
           + + Q V +F + +  FD
Sbjct: 736 DNQKQAVANFMKDWEPFD 753



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,666,686
Number of extensions: 1046680
Number of successful extensions: 2948
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2939
Number of HSP's successfully gapped: 3
Length of query: 613
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 506
Effective length of database: 11,448,903
Effective search space: 5793144918
Effective search space used: 5793144918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)