Os03g0740700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein similar to CwfJ, C-terminal 1 domain containing protein.
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Os03g0740700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein similar to CwfJ, C-terminal 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.67 | 0.243 | 7.67 | 1.09 | 0.244 | 0.99 | -0.621 | 0.772 | 0.156 | 6.47 | 21.24 | 12 | -- | -- |
| 26.9 | 0.242 | 7.69 | 0.955 | 0.244 | 1.06 | -0.794 | -- | 0.117 | 5.81 | 22 | 12 | -- | -- |
| 27.37 | 0.244 | 7.66 | 1.1 | 0.27 | 0.94 | -- | 0.869 | 0.176 | 7.36 | 21.29 | 44 | -- | -- |
| 27.72 | 0.245 | 7.68 | 0.962 | 0.338 | 0.965 | -- | -- | 0.141 | 7.95 | 22.1 | 107 | -- | -- |
| 30.35 | 0.258 | 7.67 | 1.13 | -- | 0.897 | -- | 0.92 | 0.185 | -- | 21.29 | 44 | -- | -- |
| 41.19 | 0.301 | 7.65 | 1.14 | 0.395 | -- | 0.725 | -- | 0.293 | 12.8 | -- | -- | -- | -- |
| 43.13 | 0.308 | 7.64 | 1.17 | 0.397 | -- | -- | -- | 0.296 | 12.1 | -- | -- | -- | -- |
| 31.11 | 0.261 | 7.68 | 0.981 | -- | 0.937 | -- | -- | 0.147 | -- | 22.1 | 107 | -- | -- |
| 49.21 | 0.327 | 7.72 | -- | 0.441 | 1.57 | -- | -- | -0.0351 | 7.39 | 14.97 | 214 | -- | -- |
| 53.07 | 0.34 | 7.65 | 1.15 | -- | -- | -- | -- | 0.29 | -- | -- | -- | -- | -- |
| 79.02 | 0.416 | 7.67 | -- | 0.382 | -- | -- | -- | 0.166 | 12 | -- | -- | -- | -- |
| 53.76 | 0.341 | 7.72 | -- | -- | 1.5 | -- | -- | -0.0101 | -- | 12.81 | 12 | -- | -- |
| 88.21 | 0.438 | 7.68 | -- | -- | -- | -- | -- | 0.162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 16 |
| 5 | 24.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 8 | 24.64 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 11 | 24.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 14 |
| 13 | 24.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 16 | 24.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 88 | 25.40 | temperature | 10 | 270 | > th | dose dependent | sin | 23 | NA |
| 169 | 25.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 181 | 25.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 21 |
| 209 | 26.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 230 | 26.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 275 | 26.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 6 |
| 329 | 26.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 15 |
| 335 | 26.65 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 342 | 26.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 387 | 26.84 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 418 | 26.92 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 425 | 26.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 463 | 27.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 16 |
| 474 | 27.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 12 |
| 566 | 27.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 15 |
| 578 | 27.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 774 | 27.75 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 822 | 27.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 909 | 28.02 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 955 | 28.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 979 | 28.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 995 | 28.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 22 |