BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0740700 Os03g0740700|AK102723
         (759 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0740700  Protein similar to CwfJ, C-terminal 1 domain c...  1138   0.0  
Os09g0364000  Zinc finger, CCCH-type domain containing protein     83   9e-16

>Os03g0740700 Protein similar to CwfJ, C-terminal 1 domain containing protein
          Length = 759

 Score = 1138 bits (2943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/645 (86%), Positives = 560/645 (86%)

Query: 115 KRRGNRKSKLXXXXXXXXXXXXXXXXXXXXXLRASDIVRKEMGLEWMLKSASSGRAESSQ 174
           KRRGNRKSKL                     LRASDIVRKEMGLEWMLKSASSGRAESSQ
Sbjct: 115 KRRGNRKSKLGGAAGDDDDEEEEDEGIGGEELRASDIVRKEMGLEWMLKSASSGRAESSQ 174

Query: 175 AGGXXXXXXXXXXXXXXXXNPKELNPYLRDNGSGYPDESSPSNAGNQLLASSVVGDGGAS 234
           AGG                NPKELNPYLRDNGSGYPDESSPSNAGNQLLASSVVGDGGAS
Sbjct: 175 AGGADKDEEEVAPEEVKKANPKELNPYLRDNGSGYPDESSPSNAGNQLLASSVVGDGGAS 234

Query: 235 WRLKALKRAKEQAAREGKQLEEVVGERWGSLGXXXXXXXXXXXXXXXXXXXXIRGRKAGQ 294
           WRLKALKRAKEQAAREGKQLEEVVGERWGSLG                    IRGRKAGQ
Sbjct: 235 WRLKALKRAKEQAAREGKQLEEVVGERWGSLGHLAASVSASRAAPSHAHLHAIRGRKAGQ 294

Query: 295 AGSSEEHSKENPKEGQQGGDSGRREYLKDVSSRHHAMRKPKPDSVPWKRNRQNISSEDQA 354
           AGSSEEHSKENPKEGQQGGDSGRREYLKDVSSRHHAMRKPKPDSVPWKRNRQNISSEDQA
Sbjct: 295 AGSSEEHSKENPKEGQQGGDSGRREYLKDVSSRHHAMRKPKPDSVPWKRNRQNISSEDQA 354

Query: 355 LISSAIAGINKFSNDGSFLEKINNLESKTVNVLTAEVDELKSDKGSSKKAPSVSTQKLNA 414
           LISSAIAGINKFSNDGSFLEKINNLESKTVNVLTAEVDELKSDKGSSKKAPSVSTQKLNA
Sbjct: 355 LISSAIAGINKFSNDGSFLEKINNLESKTVNVLTAEVDELKSDKGSSKKAPSVSTQKLNA 414

Query: 415 NQLAAKILQLRMKGKHEEAEQLSREMEAVLENEDTAVEEPRHEVRSSTRNTIKPSXXXXX 474
           NQLAAKILQLRMKGKHEEAEQLSREMEAVLENEDTAVEEPRHEVRSSTRNTIKPS     
Sbjct: 415 NQLAAKILQLRMKGKHEEAEQLSREMEAVLENEDTAVEEPRHEVRSSTRNTIKPSAADRR 474

Query: 475 XXXXXXXXHLANKIMHNKQYNMSKSIEDEYDFGDAPSKKGKRRNKDAHEERRSTHWLTTQ 534
                   HLANKIMHNKQYNMSKSIEDEYDFGDAPSKKGKRRNKDAHEERRSTHWLTTQ
Sbjct: 475 KREEDADRHLANKIMHNKQYNMSKSIEDEYDFGDAPSKKGKRRNKDAHEERRSTHWLTTQ 534

Query: 535 KERCMYCFENPSRPKHLVVAIGNFTYLMLPQLEPVVPGHCIILPLQHESATRTVDRSVWE 594
           KERCMYCFENPSRPKHLVVAIGNFTYLMLPQLEPVVPGHCIILPLQHESATRTVDRSVWE
Sbjct: 535 KERCMYCFENPSRPKHLVVAIGNFTYLMLPQLEPVVPGHCIILPLQHESATRTVDRSVWE 594

Query: 595 EIRNFKKCLLKMFAQQDKDIVFMETVISLAKQRRHCMIECIPIPSEVSNNAPMYFKKAID 654
           EIRNFKKCLLKMFAQQDKDIVFMETVISLAKQRRHCMIECIPIPSEVSNNAPMYFKKAID
Sbjct: 595 EIRNFKKCLLKMFAQQDKDIVFMETVISLAKQRRHCMIECIPIPSEVSNNAPMYFKKAID 654

Query: 655 EAEEEWTQHDMKKLIPTKGNLHQVIPENFAYFHVEFGLDRGFAHVIDDESKFSAGFGLNV 714
           EAEEEWTQHDMKKLIPTKGNLHQVIPENFAYFHVEFGLDRGFAHVIDDESKFSAGFGLNV
Sbjct: 655 EAEEEWTQHDMKKLIPTKGNLHQVIPENFAYFHVEFGLDRGFAHVIDDESKFSAGFGLNV 714

Query: 715 IRGMLQLXXXXXXXXXXXXXXXNQKQAVANFMKDWEPFDWTKQLD 759
           IRGMLQL               NQKQAVANFMKDWEPFDWTKQLD
Sbjct: 715 IRGMLQLREEDMHRRRRHESMDNQKQAVANFMKDWEPFDWTKQLD 759



>Os09g0364000 Zinc finger, CCCH-type domain containing protein
          Length = 613

 Score = 82.8 bits (203), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 23/226 (10%)

Query: 503 EYDFGDAPSKKGKRRNKDAHEERRSTHWLTTQKERCMYCFENPSRPKHLVVAIGNFTYLM 562
           E  F  + S +G  R+     ERR        +  C +C  +P    HLV++IG   Y  
Sbjct: 370 ECRFAHSLSDEGAVRDTKPRSERRRV------ESSCWFCLSSPDVESHLVISIGEGYYCA 423

Query: 563 LPQLEPVVPGHCIILPLQHESATRTVDRSVWEEIRNFKKCLLKMFAQQDKDIVFMETVIS 622
           L +  P+VP H +++P++H S+T  +      E+  +K  L K F +Q K  ++ E V  
Sbjct: 424 LAK-GPLVPNHVLVIPVEHCSSTLKMPVEAEAELGRYKDALAKYFEKQGKIAIYFEWV-- 480

Query: 623 LAKQRRHCMIECIPIPSEVSNNAPMYFKKAIDEAEEEWTQHDMKKLIPTKGN-------L 675
            ++Q RH  ++ +P+P   +++    F  A      E++      ++   G+       L
Sbjct: 481 -SQQSRHANLQAVPVPLSKASSVKKIFHLAAQRLGFEFS------VVNPDGDANRARELL 533

Query: 676 HQVIPENFAYFHVEFGLDRGFAHVIDDESKFSAGFGLNVIRGMLQL 721
                   + F+VE        H++D   KF A FG  V+ G+L +
Sbjct: 534 RSECDSKSSLFYVELPEGSVLLHLVDSNEKFPAQFGREVLAGLLSM 579



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.129    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,075,380
Number of extensions: 789118
Number of successful extensions: 2107
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2101
Number of HSP's successfully gapped: 2
Length of query: 759
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 651
Effective length of database: 11,396,689
Effective search space: 7419244539
Effective search space used: 7419244539
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)