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Os09g0364000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CCCH-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.9 (0.0218) R2 : 0.514
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.22 (0.0565) R2dC : 0.5 R2C : 0.487
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.201 (0.0459) R2dN8 : 0.0266 R2N8 : 0.0141
σ : 0.411
deviance : 77.18
__
_____
C
peak time of C : 16.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.26 0.359 8.95 0.142 1.25 -0.529 -0.145 0.688 0.0807 16.7 19.63 4187 -- --
58.85 0.357 8.91 0.239 1.26 -0.67 -0.135 -- 0.14 16.7 19.29 4140 -- --
58.32 0.356 8.95 0.144 1.25 -0.531 -- 0.672 0.0806 16.8 19.64 4188 -- --
58.65 0.357 8.92 0.228 1.28 -0.707 -- -- 0.119 16.7 19 4176 -- --
135.77 0.546 8.9 0.411 -- -0.522 -- 0.256 0.148 -- 19.64 4188 -- --
66.49 0.382 8.89 0.637 1.23 -- -0.0484 -- 0.273 16.8 -- -- -- --
66.49 0.382 8.89 0.637 1.23 -- -- -- 0.272 16.8 -- -- -- --
136.07 0.546 8.89 0.447 -- -0.545 -- -- 0.156 -- 19.64 4188 -- --
59.77 0.36 8.92 -- 1.28 -0.769 -- -- 0.099 16.6 18.9 4188 -- --
147.11 0.567 8.88 0.59 -- -- -- -- 0.24 -- -- -- -- --
77.18 0.411 8.9 -- 1.22 -- -- -- 0.201 16.8 -- -- -- --
141.11 0.555 8.91 -- -- -0.625 -- -- 0.096 -- 19.64 4188 -- --
156.3 0.584 8.89 -- -- -- -- -- 0.175 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.09 temperature 10.0 90 > th dose dependent rect. 8 20
3 51.46 temperature 10.0 10 > th dose dependent rect. 9 19
11 52.58 temperature 20.0 90 > th dose independent rect. 8 20
22 53.29 wind 5.0 270 < th dose independent rect. 3 3
36 53.68 atmosphere 1000.0 90 > th dose dependent rect. 4 4
38 53.71 temperature 30.0 270 < th dose dependent rect. 3 2
43 53.84 precipitation 0.1 270 < th dose independent rect. 3 3
44 53.84 precipitation 0.1 270 < th dose dependent rect. 3 3
53 54.02 wind 7.0 90 < th dose independent rect. 8 20
56 54.07 temperature 10.0 270 > th dose dependent rect. 21 14
59 54.09 atmosphere 1000.0 270 > th dose dependent rect. 4 1
62 54.14 wind 9.0 270 < th dose independent rect. 6 21
76 54.29 wind 9.0 270 < th dose dependent rect. 7 4
83 54.42 temperature 20.0 270 > th dose independent rect. 20 15
85 54.43 atmosphere 1010.0 270 < th dose independent rect. 3 3
87 54.44 temperature 10.0 270 > th dose independent rect. 3 3
89 54.44 temperature 30.0 270 < th dose independent rect. 3 3
90 54.44 humidity 50.0 270 > th dose independent rect. 3 3
93 54.44 atmosphere 995.0 270 > th dose independent rect. 3 3
95 54.44 radiation 20.0 270 < th dose independent rect. 3 3
98 54.44 temperature 10.0 270 > th dose independent rect. 6 21
105 54.48 radiation 20.0 1440 < th dose independent rect. 11 2
108 54.49 radiation 40.0 270 < th dose dependent rect. 3 3
110 54.50 temperature 20.0 90 > th dose independent rect. 22 15
119 54.58 atmosphere 1005.0 10 > th dose dependent rect. 3 5
120 54.61 radiation 1.0 270 < th dose dependent rect. 3 2
133 54.63 temperature 10.0 90 > th dose independent rect. 8 20
137 54.64 atmosphere 1005.0 90 > th dose independent rect. 4 4
140 54.64 temperature 10.0 270 > th dose dependent rect. 8 2
159 54.67 wind 1.0 270 > th dose independent rect. 3 2
165 54.69 wind 9.0 270 < th dose dependent rect. 3 3
174 54.75 radiation 1.0 270 < th dose independent rect. 3 2
205 54.83 wind 9.0 270 < th dose dependent rect. 4 1
212 54.87 precipitation 0.1 270 < th dose independent rect. 6 21
213 54.87 precipitation 0.1 270 < th dose dependent rect. 6 21
231 54.96 wind 1.0 270 > th dose independent rect. 11 20
232 54.96 radiation 1.0 270 < th dose dependent rect. 3 9
237 55.00 radiation 20.0 1440 < th dose dependent rect. 11 2
251 55.08 precipitation 0.1 90 < th dose independent rect. 8 20
255 55.08 precipitation 0.1 90 < th dose dependent rect. 8 20
292 55.19 temperature 15.0 90 > th dose independent rect. 8 6
302 55.21 atmosphere 1005.0 270 > th dose independent rect. 4 1
310 55.24 radiation 1.0 270 > th dose independent rect. 8 2
311 55.24 radiation 1.0 270 < th dose dependent rect. 3 15
314 55.25 atmosphere 995.0 90 > th dose independent rect. 8 20
329 55.27 radiation 1.0 270 < th dose independent rect. 3 9
343 55.31 wind 5.0 270 < th dose independent rect. 8 2
347 55.33 humidity 90.0 90 < th dose independent rect. 8 6
350 55.33 temperature 10.0 270 > th dose dependent rect. 17 9
386 55.40 wind 9.0 90 < th dose dependent rect. 8 20
395 55.43 wind 1.0 270 > th dose independent rect. 1 6
409 55.46 temperature 15.0 270 > th dose independent rect. 9 1
414 55.46 temperature 30.0 90 < th dose dependent rect. 14 18
423 55.48 temperature 10.0 270 > th dose dependent rect. 6 6
426 55.50 humidity 90.0 10 < th dose independent rect. 9 5
446 55.54 radiation 1.0 270 < th dose independent rect. 3 14
455 55.57 precipitation 0.1 270 < th dose independent rect. 2 14
457 55.57 precipitation 0.1 270 < th dose dependent rect. 2 14
527 55.78 wind 9.0 270 < th dose independent rect. 16 10
528 55.78 wind 1.0 270 > th dose independent rect. 12 18
531 55.78 humidity 50.0 270 > th dose dependent rect. 4 1
532 55.78 temperature 10.0 10 > th dose dependent rect. 9 5
565 55.85 atmosphere 1015.0 90 < th dose independent rect. 8 20
568 55.87 humidity 90.0 270 < th dose independent rect. 9 1
571 55.87 precipitation 0.1 90 < th dose independent rect. 8 6
576 55.87 precipitation 0.1 90 < th dose dependent rect. 8 6
602 55.94 humidity 50.0 90 > th dose independent rect. 8 6
610 55.97 radiation 30.0 270 < th dose independent rect. 16 10
621 55.99 precipitation 0.1 90 < th dose independent rect. 14 18
624 55.99 precipitation 0.1 90 < th dose dependent rect. 14 18
629 56.02 atmosphere 995.0 90 > th dose independent rect. 8 6
630 56.02 atmosphere 1015.0 90 < th dose independent rect. 8 6
631 56.02 temperature 10.0 270 > th dose independent rect. 16 10
633 56.02 temperature 10.0 270 > th dose independent rect. 2 14
634 56.02 atmosphere 1015.0 270 < th dose independent rect. 2 14
635 56.02 temperature 10.0 90 > th dose independent rect. 14 18
644 56.04 temperature 15.0 270 > th dose independent rect. 6 6
647 56.05 radiation 1.0 90 > th dose independent rect. 8 6
651 56.06 humidity 50.0 270 > th dose dependent rect. 3 3
673 56.12 precipitation 0.1 270 < th dose independent rect. 16 10
675 56.12 precipitation 0.1 270 < th dose dependent rect. 16 10
677 56.12 wind 9.0 270 < th dose dependent rect. 6 20
679 56.13 atmosphere 995.0 270 > th dose independent rect. 6 21
710 56.17 radiation 40.0 90 < th dose independent rect. 14 18
741 56.21 wind 9.0 90 < th dose independent rect. 14 18
745 56.22 precipitation 0.1 270 < th dose independent rect. 7 3
750 56.22 precipitation 0.1 270 < th dose dependent rect. 7 3
751 56.23 precipitation 0.1 270 < th dose independent rect. 9 1
755 56.23 precipitation 0.1 270 < th dose independent rect. 10 21
756 56.23 precipitation 0.1 270 < th dose dependent rect. 9 1
758 56.23 temperature 10.0 90 > th dose dependent rect. 4 4
761 56.23 precipitation 0.1 270 < th dose dependent rect. 10 21
763 56.24 temperature 10.0 1440 > th dose independent rect. 5 5
766 56.24 atmosphere 995.0 1440 > th dose independent rect. 5 5
767 56.24 atmosphere 1015.0 1440 < th dose independent rect. 5 5
769 56.24 temperature 10.0 1440 > th dose independent rect. 10 19
780 56.26 humidity 50.0 270 > th dose independent rect. 8 2
785 56.26 wind 7.0 270 < th dose independent rect. 6 6
796 56.28 atmosphere 995.0 270 > th dose independent rect. 7 3
797 56.28 atmosphere 1015.0 270 < th dose independent rect. 7 3
801 56.28 temperature 10.0 270 > th dose independent rect. 10 21
827 56.30 temperature 10.0 43200 > th dose independent rect. 10 4
837 56.32 precipitation 0.1 10 < th dose independent rect. 14 19
842 56.32 precipitation 0.1 10 < th dose dependent rect. 14 19
853 56.34 radiation 1.0 270 > th dose independent rect. 6 6
864 56.35 wind 9.0 270 < th dose independent rect. 2 14
869 56.36 wind 9.0 10 < th dose independent rect. 9 5
879 56.37 wind 1.0 90 > th dose independent rect. 8 6
883 56.38 radiation 1.0 10 > th dose independent rect. 9 5
924 56.43 wind 9.0 1440 < th dose independent rect. 5 4
928 56.43 humidity 50.0 1440 > th dose independent rect. 5 4
950 56.45 temperature 10.0 10 > th dose independent rect. 9 5
952 56.45 humidity 50.0 10 > th dose independent rect. 9 5
953 56.45 atmosphere 995.0 10 > th dose independent rect. 9 5
954 56.45 atmosphere 1015.0 10 < th dose independent rect. 9 5
955 56.45 precipitation 0.1 10 < th dose independent rect. 9 5
956 56.45 atmosphere 995.0 90 > th dose independent rect. 14 18
957 56.45 temperature 10.0 10 > th dose independent rect. 14 19
960 56.45 precipitation 0.1 10 < th dose dependent rect. 9 5
992 56.50 atmosphere 995.0 270 > th dose independent rect. 2 14
993 56.50 humidity 50.0 90 > th dose independent rect. 14 18