BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0348800 Os09g0348800|AK063411
(527 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0348800 Conserved hypothetical protein 869 0.0
Os12g0461400 526 e-149
Os03g0625000 278 7e-75
Os11g0495300 220 2e-57
Os04g0587900 Conserved hypothetical protein 215 7e-56
Os10g0477400 165 6e-41
Os03g0624950 79 1e-14
>Os09g0348800 Conserved hypothetical protein
Length = 527
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/527 (82%), Positives = 436/527 (82%)
Query: 1 MRRLSLGNREASNCSDQAVSGATLPRCSTRSSCSQQPNHSPNLDXXXXXXXXXXXXIWFR 60
MRRLSLGNREASNCSDQAVSGATLPRCSTRSSCSQQPNHSPNLD IWFR
Sbjct: 1 MRRLSLGNREASNCSDQAVSGATLPRCSTRSSCSQQPNHSPNLDEEILEEEETSEEIWFR 60
Query: 61 GPTRVPPQPTREEDKPVLTPVGDRQWRANDYGGNIRVPNSILTLLLKQWFPGIVTLKGKE 120
GPTRVPPQPTREEDKPVLTPVGDRQWRANDYGGNIRVPNSILTLLLKQWFPGIVTLKGKE
Sbjct: 61 GPTRVPPQPTREEDKPVLTPVGDRQWRANDYGGNIRVPNSILTLLLKQWFPGIVTLKGKE 120
Query: 121 EPAWSWKHYRIAPDTPRSNQIRLPSCLHRVEEDFWLYFRWAEGKEQEARKVVHNCVKGLV 180
EPAWSWKHYRIAPDTPRSNQIRLPSCLHRVEEDFWLYFRWAEGKEQEARKVVHNCVKGLV
Sbjct: 121 EPAWSWKHYRIAPDTPRSNQIRLPSCLHRVEEDFWLYFRWAEGKEQEARKVVHNCVKGLV 180
Query: 181 DRLFYETRILAVLNYQRKILKVNTSREIACRTYLTESEYLKVEPWWFLNSENAWRELIRL 240
DRLFYETRILAVLNYQRKILKVNTSREIACRTYLTESEYLKVEPWWFLNSENAWRELIRL
Sbjct: 181 DRLFYETRILAVLNYQRKILKVNTSREIACRTYLTESEYLKVEPWWFLNSENAWRELIRL 240
Query: 241 RWCNPKWQAVSRAHRIRREKMKGPSHRQGSANLSRYQKNLEKKKKRPVAPLEAYTEGRRE 300
RWCNPKWQAVSRAHRIRREKMKGPSHRQGSANLSRYQKNLEKKKKRPVAPLEAYTEGRRE
Sbjct: 241 RWCNPKWQAVSRAHRIRREKMKGPSHRQGSANLSRYQKNLEKKKKRPVAPLEAYTEGRRE 300
Query: 301 NREDGQFSCDPRVAEKLEAYAAAYVQLHGPENDWRTSPIDPVAVHMAGGGKKHGRFMIGD 360
NREDGQFSCDPRVAEKLEAYAAAYVQLHGPENDWRTSPIDPVAVHMAGGGKKHGRFMIGD
Sbjct: 301 NREDGQFSCDPRVAEKLEAYAAAYVQLHGPENDWRTSPIDPVAVHMAGGGKKHGRFMIGD 360
Query: 361 GLIDSSAVFGXXXXXXXXXXXXXXXXXXNTNQVEDLLXXXXXXXXXXXXXXXXXXXXXXX 420
GLIDSSAVFG NTNQVEDLL
Sbjct: 361 GLIDSSAVFGDNSRDDQRPRRRLRTDHDNTNQVEDLLRQLQEEREAREREREEREREKER 420
Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIASQQKSAFFEAALRVIQSKLN 480
IASQQKSAFFEAALRVIQSKLN
Sbjct: 421 ERQEKEQEKECEREERAREKEQERKEREEERKERELEKIASQQKSAFFEAALRVIQSKLN 480
Query: 481 IDLSASGTPPLPVMLTHLASSGPVASNGNSGPNHVGVGAASGAIVNF 527
IDLSASGTPPLPVMLTHLASSGPVASNGNSGPNHVGVGAASGAIVNF
Sbjct: 481 IDLSASGTPPLPVMLTHLASSGPVASNGNSGPNHVGVGAASGAIVNF 527
>Os12g0461400
Length = 873
Score = 526 bits (1355), Expect = e-149, Method: Compositional matrix adjust.
Identities = 265/397 (66%), Positives = 296/397 (74%), Gaps = 23/397 (5%)
Query: 1 MRRLSLGNREASNCSDQAVSGATLPRCSTRSSCSQQPNHSPNLDXXXXXXXXXXXXIWFR 60
MRRLSLG RE SN SDQAVS A LPRC TRSS SQQP++S NLD ++FR
Sbjct: 369 MRRLSLGCREDSNPSDQAVSAAILPRCRTRSSGSQQPDNSSNLDEILAGEETDEE-MFFR 427
Query: 61 GPTRVPPQPTREEDKPVLTPVGDRQWRANDYGGNIRVPNSILTLLLKQWFPGIVTLKGKE 120
GPTR+PP+PTR+EDKPVLTP GDRQW+AND+GGNIRVP ILT+++K +FPGIV KG++
Sbjct: 428 GPTRMPPRPTRDEDKPVLTPKGDRQWQANDFGGNIRVPTGILTVIIKHFFPGIVNFKGRD 487
Query: 121 EPAWSWKHYRIAPDTPRSNQI-RLPSCLHRVEEDFWLYFRWAEGKEQEARKVVHNCVKGL 179
EPAWSWKHYRIAPD P S + RLPS LHRVEEDFWLYFRWAE EQ+ARKVV NC+K L
Sbjct: 488 EPAWSWKHYRIAPDDPESAILNRLPSRLHRVEEDFWLYFRWAERTEQDARKVVRNCIKHL 547
Query: 180 VDRLFYETRILAVLNYQRKILKVNTSREIACRTYLTESEYLKVEPWWFLNSENAWRELIR 239
L YETRILAVLNYQRKI LKVEPWWFL ++NAWRELIR
Sbjct: 548 FSDLIYETRILAVLNYQRKI--------------------LKVEPWWFLKAKNAWRELIR 587
Query: 240 LRWCNPKWQAVSRAHRIRREKMKGPSHRQGSANLSRYQKNLEKKKKRPVAPLEAYTEGRR 299
L+WCNP+WQA S AHRIRREKM PSHRQGSANLSR+QKNL KKKKR V+ +EAYTEGR
Sbjct: 588 LKWCNPEWQASSHAHRIRREKMTWPSHRQGSANLSRFQKNL-KKKKRVVSQMEAYTEGRG 646
Query: 300 ENREDGQFSCDPRVAEKLEAYAAAYVQLHGPENDWRTSPIDPVAVHMAGGGKKHGRFMIG 359
E EDG+F C+ KLEAY AYVQLHG +DWR SPIDP+AVHMAGGGKKHGRFMIG
Sbjct: 647 EYGEDGRFRCNTHATGKLEAYNEAYVQLHGAGSDWRNSPIDPMAVHMAGGGKKHGRFMIG 706
Query: 360 DGLIDSSAVFGXXXXXXXXXXXXXXXXXXNTNQVEDL 396
DG IDSSA+FG NTNQ+EDL
Sbjct: 707 DGHIDSSAIFGDSSLNDPRPRRRLRTNPDNTNQIEDL 743
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 459 IASQQKSAFFEAALRVIQSKLNIDL-SASGTPPLPVMLTHLASSGPVASNGNS-GPNHVG 516
IA +QKS+FFE ALR IQ KLNIDL SASG PPLPVMLT+ A S A NGN +H G
Sbjct: 806 IAFEQKSSFFEVALRAIQLKLNIDLPSASGPPPLPVMLTNPALSVSSALNGNPFCADHGG 865
Query: 517 VGAASGAI 524
SGAI
Sbjct: 866 AAIVSGAI 873
>Os03g0625000
Length = 353
Score = 278 bits (711), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 144/239 (60%), Positives = 161/239 (67%), Gaps = 35/239 (14%)
Query: 165 EQEARKVVHNCVKGLVDRLFYETRILAVLNYQRKILKVNTSREIACRTYLTESEYLKVEP 224
EQ ARKVV NC+K L L YETRI+AVLNYQRKILKV EP
Sbjct: 2 EQAARKVVRNCIKRLFSDLIYETRIMAVLNYQRKILKV--------------------EP 41
Query: 225 WWFLNSENAWRELIRLRWCNPKWQAVSRAHRIRREKMKGPSHRQGSANLSRYQKNLEKKK 284
WWFL ++NAWRELIRL+WCNP+W IRREKM PSHRQGSANLSR+QKNLEKKK
Sbjct: 42 WWFLKAKNAWRELIRLKWCNPEW--------IRREKMTWPSHRQGSANLSRFQKNLEKKK 93
Query: 285 KRPVAPLEAYTEGRRENREDGQFSCDPRVAEKL-------EAYAAAYVQLHGPENDWRTS 337
++ V+ +EAYTEGR E EDG+F C+ V KL EAY AYVQLHG +DWR S
Sbjct: 94 RQVVSQMEAYTEGRGEYGEDGRFRCNTHVTGKLVIAEYLVEAYNEAYVQLHGAGSDWRNS 153
Query: 338 PIDPVAVHMAGGGKKHGRFMIGDGLIDSSAVFGXXXXXXXXXXXXXXXXXXNTNQVEDL 396
PIDP+AVHMAGGGKKHGRFMIGDGLIDSSA+FG NTNQ+EDL
Sbjct: 154 PIDPMAVHMAGGGKKHGRFMIGDGLIDSSAIFGDSSLDDPRPRRRLRTNLDNTNQIEDL 212
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 459 IASQQKSAFFEAALRVIQSKLNIDL-SASGTPPLPVMLTHLASSGPVASNGNS-GPNHVG 516
IA +QKS+FFE ALR IQ KLNIDL SASG PPLPVMLT+ A S A NGNS +H G
Sbjct: 275 IAFEQKSSFFEVALRAIQLKLNIDLPSASGPPPLPVMLTNPALSVSSALNGNSFCADHGG 334
Query: 517 VGAASGAIV 525
SGAI+
Sbjct: 335 AAIVSGAIL 343
>Os11g0495300
Length = 165
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/160 (68%), Positives = 127/160 (79%), Gaps = 2/160 (1%)
Query: 1 MRRLSLGNREASNCSDQAVSGATLPRCSTRSSCSQQPNHSPNLDXXXXXXXXXXXXIWFR 60
M RLSLG RE SN SDQAVS ATLPRC TRSS SQQP++S NLD ++FR
Sbjct: 1 MWRLSLGCREDSNPSDQAVSAATLPRCRTRSSGSQQPDNSSNLDEILAGEETDEE-MFFR 59
Query: 61 GPTRVPPQPTREEDKPVLTPVGDRQWRANDYGGNIRVPNSILTLLLKQWFPGIVTLKGKE 120
GPTR+PP+PTR+EDKPV+TP GDRQW+AND+GGNIRVP ILT+L+K +FPGIV KG++
Sbjct: 60 GPTRMPPRPTRDEDKPVMTPKGDRQWQANDFGGNIRVPTGILTVLIKHFFPGIVNFKGRD 119
Query: 121 EPAWSWKHYRIAPDTPRSNQI-RLPSCLHRVEEDFWLYFR 159
EPAWSWKHYRIAPD P S + RLPS LHRVEEDFW+ FR
Sbjct: 120 EPAWSWKHYRIAPDDPESAILNRLPSRLHRVEEDFWICFR 159
>Os04g0587900 Conserved hypothetical protein
Length = 329
Score = 215 bits (547), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 104/183 (56%), Positives = 127/183 (69%)
Query: 188 RILAVLNYQRKILKVNTSREIACRTYLTESEYLKVEPWWFLNSENAWRELIRLRWCNPKW 247
RILAV+ Y +KILK + R ACRTYLT++EY+K +PWWFLN+ AW L LRWCNP+W
Sbjct: 1 RILAVITYHKKILKTDIDRPTACRTYLTKAEYMKAKPWWFLNAGRAWALLSDLRWCNPEW 60
Query: 248 QAVSRAHRIRREKMKGPSHRQGSANLSRYQKNLEKKKKRPVAPLEAYTEGRRENREDGQF 307
QA SRA RR KMK P+HRQGSANL RY KNLEKK PV L+AY R + ++G
Sbjct: 61 QAYSRACSERRAKMKTPAHRQGSANLHRYHKNLEKKMGTPVHVLKAYAHANRVDPDEGYC 120
Query: 308 SCDPRVAEKLEAYAAAYVQLHGPENDWRTSPIDPVAVHMAGGGKKHGRFMIGDGLIDSSA 367
D LEAYA A+ + HG +++WRT PID VAVHMAGGGKKHGRF + +GL+ +
Sbjct: 121 DEDSSQNMLLEAYARAFTERHGEDSNWRTEPIDGVAVHMAGGGKKHGRFFLLNGLLKTPD 180
Query: 368 VFG 370
V
Sbjct: 181 VLA 183
>Os10g0477400
Length = 414
Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 77/117 (65%), Positives = 94/117 (80%), Gaps = 10/117 (8%)
Query: 57 IWFRGPTRVPPQPTREEDKPVLTPVGDRQWRANDYGGNIRVPNSILTLLLKQWFPGIVTL 116
++FRGPTR+PP+PTR+EDKPVLTP DRQW+AND+GGNIRVP ILT+L+K +FPGIV
Sbjct: 95 MFFRGPTRMPPRPTRDEDKPVLTPKRDRQWQANDFGGNIRVPTGILTVLIKHFFPGIVKF 154
Query: 117 KGKEEPAWSWKHYRIAPDTPRSNQI-RLPSCLHRVEEDFWLYFRWAEGKEQEARKVV 172
KG++EPAWSWKHYRIAPD P S + RLPS LHRVEEDFW E++ R++V
Sbjct: 155 KGRDEPAWSWKHYRIAPDDPESAVLNRLPSRLHRVEEDFW---------EKKKRRIV 202
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/100 (68%), Positives = 80/100 (80%), Gaps = 1/100 (1%)
Query: 271 ANLSRYQKNL-EKKKKRPVAPLEAYTEGRRENREDGQFSCDPRVAEKLEAYAAAYVQLHG 329
+ L R +++ EKKK+R V+ +EAYTEGR E EDG+F C+ V KLEAY AYVQLHG
Sbjct: 184 SRLHRVEEDFWEKKKRRIVSQMEAYTEGRGEFGEDGRFRCNTHVTGKLEAYNEAYVQLHG 243
Query: 330 PENDWRTSPIDPVAVHMAGGGKKHGRFMIGDGLIDSSAVF 369
+DWR SPIDP+AVHMAGGGKKHGRFMIGDGLIDSSA+F
Sbjct: 244 AGSDWRNSPIDPMAVHMAGGGKKHGRFMIGDGLIDSSAIF 283
>Os03g0624950
Length = 138
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 18 AVSGATLPRCSTRSSCSQQPNHSPNLDXXXXXXXXXXXXIWFRGPTRVPPQPTREEDKPV 77
AVS ATLPRC TRSS SQQ ++S +LD ++FRGPTR+PP+PTR+EDKPV
Sbjct: 73 AVSAATLPRCRTRSSGSQQLDNSSDLDEILADEETDEE-MFFRGPTRMPPRPTRDEDKPV 131
Query: 78 LTPVGDR 84
LTP GDR
Sbjct: 132 LTPKGDR 138
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,911,716
Number of extensions: 736576
Number of successful extensions: 1787
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1776
Number of HSP's successfully gapped: 11
Length of query: 527
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 422
Effective length of database: 11,553,331
Effective search space: 4875505682
Effective search space used: 4875505682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)