Os09g0348800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0348800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 320.67 | 0.841 | 5.07 | -1.49 | 2.08 | 0.739 | 1.5 | 10.5 | 0.905 | 16.2 | 10.87 | 4320 | 17.9 | 1.02 |
| 362.35 | 0.887 | 5.55 | -1.04 | 2.38 | 1.37 | 1.97 | -- | 0.69 | 16.5 | 0.67 | 47520 | 18.8 | 0.0335 |
| 326.65 | 0.842 | 5.07 | -1.51 | 2.09 | 0.78 | -- | 10.6 | 0.903 | 16.3 | 11.67 | 4320 | 17.9 | 1.48 |
| 349.77 | 0.871 | 5.47 | -0.781 | 2.14 | 1.94 | -- | -- | 1.05 | 16.3 | 0.6707 | 47520 | 18.8 | 0.195 |
| 556.7 | 1.1 | 5.07 | -1.96 | -- | 1.23 | -- | 10.9 | 0.764 | -- | 20.31 | 4321 | 17.9 | 1.28 |
| 463.38 | 1.01 | 5.6 | -1.18 | 2.18 | -- | 1.87 | -- | 0.391 | 16.1 | -- | -- | -- | -- |
| 473.03 | 1.02 | 5.6 | -1.15 | 2.19 | -- | -- | -- | 0.402 | 16.2 | -- | -- | -- | -- |
| 591.78 | 1.13 | 5.44 | -0.656 | -- | 2.28 | -- | -- | 1.04 | -- | 0.6701 | 47520 | 18.8 | 1.61 |
| 360.79 | 0.885 | 5.41 | -- | 2.11 | 1.99 | -- | -- | 1.13 | 16.3 | 0.67 | 47520 | 18.8 | 0.183 |
| 733.28 | 1.27 | 5.58 | -1.24 | -- | -- | -- | -- | 0.343 | -- | -- | -- | -- | -- |
| 508.18 | 1.05 | 5.57 | -- | 2.22 | -- | -- | -- | 0.53 | 16.2 | -- | -- | -- | -- |
| 592.27 | 1.13 | 5.42 | -- | -- | 2.41 | -- | -- | 1.21 | -- | 0.6689 | 47520 | 18.9 | 6.14 |
| 774.03 | 1.3 | 5.55 | -- | -- | -- | -- | -- | 0.481 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 312.71 | humidity | 90 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 4 | 316.65 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 6 | 317.46 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 5 |
| 10 | 318.89 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 28 | 320.19 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 14 |
| 33 | 320.54 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 12 |
| 40 | 320.70 | humidity | 90 | 43200 | > th | dose dependent | rect. | 24 | 7 |
| 84 | 321.37 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 93 | 321.50 | humidity | 90 | 43200 | > th | dose independent | sin | 13 | NA |
| 101 | 321.59 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 117 | 321.82 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 14 |
| 146 | 322.19 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 165 | 322.31 | humidity | 90 | 43200 | > th | dose dependent | sin | 10 | NA |
| 167 | 322.33 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 178 | 322.42 | humidity | 90 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 302 | 323.32 | humidity | 90 | 43200 | < th | dose independent | sin | 13 | NA |
| 351 | 323.68 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 368 | 323.78 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 405 | 324.01 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 450 | 324.30 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 532 | 324.85 | radiation | 10 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 535 | 324.88 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 548 | 324.99 | radiation | 10 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 570 | 325.07 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 580 | 325.12 | radiation | 30 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 597 | 325.23 | radiation | 30 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 615 | 325.34 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 622 | 325.41 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 650 | 325.52 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 664 | 325.66 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 719 | 326.05 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 744 | 326.24 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 802 | 326.52 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 827 | 326.68 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 861 | 326.89 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 14 |
| 862 | 326.90 | temperature | 20 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 865 | 326.92 | temperature | 20 | 43200 | < th | dose dependent | rect. | 2 | 17 |
| 872 | 326.94 | radiation | 40 | 14400 | > th | dose dependent | rect. | 14 | 19 |
| 885 | 327.01 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 20 |
| 903 | 327.10 | temperature | 20 | 43200 | < th | dose dependent | sin | 1 | NA |
| 910 | 327.13 | temperature | 20 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 925 | 327.18 | temperature | 20 | 43200 | < th | dose dependent | rect. | 10 | 20 |
| 950 | 327.26 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 17 |
| 970 | 327.32 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |