FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0587900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0242) R2 : 0.266
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.656 (0.0509) R2dN8 : 0.344 R2N8 : 0.266
σ : 0.456
deviance : 95.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
82.74 0.427 2.99 -0.522 0.282 0.23 -1.15 -1.66 0.501 20.5 10.18 4393 -- --
84.51 0.428 2.96 -0.305 0.237 0.228 -1.09 -- 0.579 20.6 11.8 5187 -- --
84.38 0.428 3 -0.603 0.236 0.262 -- -2.18 0.464 20.3 10.4 5254 -- --
88.26 0.44 2.96 -0.249 0.382 0.166 -- -- 0.64 21.8 15.75 5224 -- --
86.79 0.434 3 -0.565 -- 0.409 -- -2.12 0.454 -- 10.6 5228 -- --
85.36 0.433 2.96 -0.272 0.28 -- -1.12 -- 0.632 20.4 -- -- -- --
89.34 0.443 2.96 -0.238 0.281 -- -- -- 0.632 20.5 -- -- -- --
91.09 0.445 2.97 -0.311 -- 0.396 -- -- 0.523 -- 10.2 5223 -- --
89.79 0.441 2.97 -- 0.261 0.248 -- -- 0.574 21.6 9.989 8081 -- --
93.77 0.452 2.95 -0.239 -- -- -- -- 0.629 -- -- -- -- --
90.83 0.446 2.95 -- 0.282 -- -- -- 0.658 20.4 -- -- -- --
92.45 0.448 2.96 -- -- 0.384 -- -- 0.591 -- 19.67 5239 -- --
95.28 0.456 2.94 -- -- -- -- -- 0.656 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.59 humidity 90.0 90 < th dose dependent rect. 19 2
18 81.43 wind 3.0 90 > th dose independent rect. 19 2
24 81.50 wind 3.0 30 > th dose independent rect. 19 9
27 81.51 wind 3.0 30 > th dose independent rect. 19 7
28 81.51 wind 3.0 30 < th dose independent rect. 3 23
39 81.59 wind 3.0 30 > th dose independent rect. 19 22
42 81.62 atmosphere 1015.0 30 < th dose independent rect. 3 23
64 81.74 humidity 90.0 90 < th dose independent rect. 19 8
66 81.75 humidity 90.0 30 < th dose independent rect. 19 3
70 81.77 atmosphere 1015.0 90 < th dose independent rect. 21 22
77 81.84 humidity 90.0 90 < th dose independent rect. 19 10
78 81.84 humidity 90.0 4320 < th dose dependent rect. 3 1
82 81.88 humidity 90.0 4320 < th dose dependent rect. 3 3
84 81.89 temperature 20.0 30 > th dose independent rect. 19 8
86 81.90 temperature 20.0 90 > th dose independent rect. 19 2
93 81.96 wind 5.0 30 < th dose dependent rect. 3 23
105 82.08 humidity 80.0 4320 > th dose independent rect. 3 9
128 82.19 wind 1.0 90 > th dose dependent rect. 19 2
130 82.21 wind 7.0 30 < th dose independent rect. 19 11
131 82.22 wind 1.0 10 < th dose independent rect. 2 1
137 82.24 humidity 90.0 270 < th dose independent rect. 16 11
139 82.25 humidity 80.0 4320 < th dose independent rect. 3 9
147 82.26 atmosphere 995.0 30 > th dose dependent rect. 19 11
181 82.34 humidity 70.0 4320 > th dose dependent rect. 3 8
184 82.35 temperature 30.0 90 < th dose independent rect. 21 22
186 82.35 radiation 20.0 30 < th dose dependent rect. 19 11
187 82.36 radiation 1.0 270 > th dose dependent rect. 18 1
197 82.36 temperature 10.0 30 > th dose dependent rect. 19 11
200 82.36 wind 9.0 30 < th dose dependent rect. 3 23
205 82.38 temperature 20.0 10 > th dose independent rect. 2 1
214 82.39 temperature 20.0 10 > th dose dependent rect. 2 1
222 82.41 atmosphere 995.0 30 > th dose independent rect. 6 13
228 82.42 temperature 15.0 10 > th dose independent rect. 3 23
234 82.43 humidity 80.0 10 > th dose independent rect. 2 1
235 82.43 wind 3.0 720 > th dose independent rect. 18 3
241 82.44 temperature 25.0 10 < th dose independent rect. 2 1
250 82.45 precipitation 0.1 30 < th dose independent rect. 19 11
252 82.45 wind 3.0 10 < th dose dependent rect. 2 1
254 82.45 precipitation 0.1 30 < th dose dependent rect. 19 11
257 82.46 atmosphere 1000.0 10 > th dose independent rect. 2 1
261 82.46 humidity 50.0 10 > th dose dependent rect. 2 1
264 82.46 atmosphere 995.0 10 > th dose dependent rect. 2 1
267 82.47 wind 9.0 10 < th dose independent rect. 2 1
269 82.47 temperature 10.0 10 > th dose independent rect. 2 1
275 82.47 humidity 50.0 10 > th dose independent rect. 2 1
284 82.47 atmosphere 1010.0 10 < th dose independent rect. 2 1
288 82.47 radiation 1.0 10 < th dose independent rect. 2 1
298 82.47 precipitation 0.1 10 < th dose independent rect. 2 1
301 82.47 temperature 10.0 30 > th dose independent rect. 19 11
302 82.47 temperature 30.0 30 < th dose independent rect. 19 11
303 82.47 humidity 50.0 30 > th dose independent rect. 19 11
305 82.47 atmosphere 995.0 30 > th dose independent rect. 19 11
306 82.47 radiation 20.0 30 < th dose independent rect. 19 11
309 82.47 temperature 10.0 30 > th dose independent rect. 6 13
311 82.47 atmosphere 1015.0 30 < th dose independent rect. 6 13
312 82.47 precipitation 0.1 30 < th dose independent rect. 6 13
322 82.47 atmosphere 1015.0 30 < th dose dependent rect. 2 1
323 82.47 radiation 1.0 10 < th dose dependent rect. 2 1
333 82.47 precipitation 0.1 10 < th dose dependent rect. 2 1
336 82.47 precipitation 0.1 30 < th dose dependent rect. 6 13
342 82.48 wind 1.0 10 > th dose independent rect. 21 22
351 82.49 humidity 80.0 4320 > th dose independent sin 4 NA
371 82.50 humidity 70.0 720 > th dose independent rect. 21 20
372 82.50 temperature 30.0 30 < th dose dependent rect. 2 1
373 82.50 radiation 40.0 720 > th dose dependent rect. 13 1
382 82.51 wind 9.0 30 < th dose independent rect. 6 13
395 82.52 atmosphere 995.0 30 > th dose independent rect. 3 23
396 82.52 wind 9.0 270 > th dose dependent rect. 18 3
404 82.53 humidity 70.0 720 > th dose independent rect. 12 5
425 82.55 temperature 10.0 30 > th dose dependent rect. 19 8
433 82.56 wind 1.0 30 > th dose independent rect. 6 13
450 82.58 wind 1.0 30 > th dose independent rect. 2 1
451 82.58 humidity 60.0 14400 > th dose independent rect. 21 1
468 82.60 humidity 80.0 4320 < th dose independent sin 4 NA
469 82.60 temperature 25.0 270 > th dose independent rect. 2 1
487 82.60 precipitation 0.1 30 < th dose independent rect. 3 23
492 82.60 precipitation 0.1 30 < th dose dependent rect. 3 23
495 82.61 wind 3.0 30 > th dose independent rect. 19 17
506 82.62 wind 3.0 30 < th dose independent rect. 6 20
507 82.62 atmosphere 1015.0 30 < th dose independent rect. 15 23
516 82.63 wind 3.0 30 < th dose independent rect. 15 11
517 82.63 humidity 70.0 720 > th dose independent rect. 6 11
518 82.63 wind 3.0 30 < th dose independent rect. 13 13
523 82.63 atmosphere 995.0 30 > th dose dependent rect. 19 9
525 82.64 wind 7.0 90 < th dose independent rect. 19 2
526 82.64 radiation 30.0 720 < th dose independent rect. 13 2
544 82.66 atmosphere 1015.0 90 < th dose independent rect. 15 10
546 82.66 radiation 10.0 4320 > th dose independent rect. 13 22
547 82.66 wind 9.0 30 < th dose independent rect. 3 23
554 82.67 atmosphere 1000.0 90 < th dose independent rect. 4 1
555 82.67 atmosphere 1000.0 10 < th dose independent rect. 5 1
570 82.67 atmosphere 1000.0 90 < th dose dependent rect. 4 1
571 82.67 atmosphere 1000.0 10 < th dose dependent rect. 5 1
586 82.68 wind 9.0 270 > th dose independent rect. 18 2
609 82.69 radiation 10.0 4320 > th dose independent rect. 6 11
622 82.69 temperature 25.0 30 > th dose dependent rect. 5 1
637 82.71 humidity 80.0 720 < th dose independent rect. 18 1
647 82.72 radiation 40.0 720 > th dose independent rect. 13 2
666 82.73 radiation 10.0 4320 > th dose independent sin 2 NA
690 82.73 radiation 10.0 4320 > th dose independent rect. 16 23
691 82.73 humidity 50.0 4320 > th dose dependent rect. 4 1
697 82.74 humidity 90.0 4320 < th dose independent rect. 4 1
704 82.74 radiation 1.0 90 > th dose independent rect. 15 23
718 82.75 humidity 80.0 4320 > th dose independent rect. 4 3
730 82.75 wind 9.0 30 < th dose dependent rect. 21 22
733 82.76 humidity 80.0 4320 > th dose independent rect. 8 4
741 82.76 radiation 1.0 90 < th dose independent rect. 19 16
752 82.77 radiation 10.0 4320 > th dose independent rect. 7 7
759 82.77 radiation 30.0 720 < th dose independent rect. 13 11
774 82.77 radiation 10.0 43200 < th dose dependent rect. 3 1
778 82.77 radiation 10.0 30 < th dose dependent rect. 19 13
779 82.78 wind 9.0 1440 < th dose independent rect. 3 1
780 82.78 temperature 10.0 1440 > th dose independent rect. 3 1
783 82.78 temperature 30.0 1440 < th dose independent rect. 3 1
787 82.78 humidity 50.0 1440 > th dose independent rect. 3 1
796 82.78 atmosphere 995.0 1440 > th dose independent rect. 3 1
797 82.78 radiation 1.0 1440 < th dose independent rect. 3 1
817 82.78 humidity 80.0 4320 < th dose independent rect. 4 3
822 82.78 radiation 10.0 10 < th dose independent rect. 6 13
824 82.78 temperature 10.0 1440 > th dose independent rect. 4 23
828 82.78 radiation 1.0 1440 < th dose dependent rect. 3 1
861 82.79 radiation 1.0 90 < th dose independent rect. 19 13
879 82.79 radiation 10.0 4320 > th dose independent rect. 9 23
909 82.80 atmosphere 1000.0 90 > th dose independent rect. 21 22
918 82.81 radiation 10.0 4320 > th dose independent no NA NA