BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0346400 Os09g0346400|AB117987
(627 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0346400 Conserved hypothetical protein 967 0.0
Os08g0390000 Moesin domain containing protein 560 e-159
Os08g0513600 Conserved hypothetical protein 72 1e-12
>Os09g0346400 Conserved hypothetical protein
Length = 627
Score = 967 bits (2500), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/627 (79%), Positives = 500/627 (79%)
Query: 1 MGMEVVGTEAAPAEVKVTDGEVNLFQENESKATAKEREEAVLFGXXXXXXXXXXXXXXXX 60
MGMEVVGTEAAPAEVKVTDGEVNLFQENESKATAKEREEAVLFG
Sbjct: 1 MGMEVVGTEAAPAEVKVTDGEVNLFQENESKATAKEREEAVLFGSDNSTATANGAANGAD 60
Query: 61 LAPPKDAEEDWPEARKTHSFFFVKIRLLEDPKLKMKIDQAEKDFQKKIQARSQIFEAIKA 120
LAPPKDAEEDWPEARKTHSFFFVKIRLLEDPKLKMKIDQAEKDFQKKIQARSQIFEAIKA
Sbjct: 61 LAPPKDAEEDWPEARKTHSFFFVKIRLLEDPKLKMKIDQAEKDFQKKIQARSQIFEAIKA 120
Query: 121 KKNERFGIISELKPLAAENKQYNEAVSEKLKAIEPLRNRLGKFRDENNAIRAQGAGICSS 180
KKNERFGIISELKPLAAENKQYNEAVSEKLKAIEPLRNRLGKFRDENNAIRAQGAGICSS
Sbjct: 121 KKNERFGIISELKPLAAENKQYNEAVSEKLKAIEPLRNRLGKFRDENNAIRAQGAGICSS 180
Query: 181 IEELEKSIKRLNDRISHESIPLDEEKRLIKQIRELEKTRPKVISTSANRAQIQDTVVERD 240
IEELEKSIKRLNDRISHESIPLDEEKRLIKQIRELEKTRPKVISTSANRAQIQDTVVERD
Sbjct: 181 IEELEKSIKRLNDRISHESIPLDEEKRLIKQIRELEKTRPKVISTSANRAQIQDTVVERD 240
Query: 241 AIQDQVKIIGEGIDGVKKERQAVRSKIKVLEDELKAIDMEMGSLQEDLTAANARKDKAHE 300
AIQDQVKIIGEGIDGVKKERQAVRSKIKVLEDELKAIDMEMGSLQEDLTAANARKDKAHE
Sbjct: 241 AIQDQVKIIGEGIDGVKKERQAVRSKIKVLEDELKAIDMEMGSLQEDLTAANARKDKAHE 300
Query: 301 SLVQLRHARDAYNASFHQNRQLLSKARDLASRSELAQVQELYKTQVDKFVAEWCNSKAFR 360
SLVQLRHARDAYNASFHQNRQLLSKARDLASRSELAQVQELYKTQVDKFVAEWCNSKAFR
Sbjct: 301 SLVQLRHARDAYNASFHQNRQLLSKARDLASRSELAQVQELYKTQVDKFVAEWCNSKAFR 360
Query: 361 EDYEKRILSSLNSRQLSRDGRMRNPDEKPIFIETEAAAPPVEQEPIQSKMXXXXXXXXXX 420
EDYEKRILSSLNSRQLSRDGRMRNPDEKPIFIETEAAAPPVEQEPIQSKM
Sbjct: 361 EDYEKRILSSLNSRQLSRDGRMRNPDEKPIFIETEAAAPPVEQEPIQSKMPAKQAKEAPA 420
Query: 421 XXXXVSPKDESRVXXXXXXXXXXXXXXXXXXYXXXXXXXXXXXXXVDVAKLKEIKRQEEM 480
VSPKDESRV Y VDVAKLKEIKRQEEM
Sbjct: 421 PQAEVSPKDESRVKAIAKPSKAKSSLDADDDYEAESPKEKPKPKEVDVAKLKEIKRQEEM 480
Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTESDNRSD 540
STESDNRSD
Sbjct: 481 EKNRLALERKKKLAEKQAAKAAARAQKEAEKKLKREEMRARRRAGAADTEASTESDNRSD 540
Query: 541 GAAEAQAEDDSAPASAPVMREQRESVRYSRNVVTKSKAPLPKAILRRKKAQSYWSWAGPX 600
GAAEAQAEDDSAPASAPVMREQRESVRYSRNVVTKSKAPLPKAILRRKKAQSYWSWAGP
Sbjct: 541 GAAEAQAEDDSAPASAPVMREQRESVRYSRNVVTKSKAPLPKAILRRKKAQSYWSWAGPA 600
Query: 601 XXXXXXXXXXXXXXGYYQYYLPASASN 627
GYYQYYLPASASN
Sbjct: 601 AAVAAALVALLAVLGYYQYYLPASASN 627
>Os08g0390000 Moesin domain containing protein
Length = 621
Score = 560 bits (1442), Expect = e-159, Method: Compositional matrix adjust.
Identities = 316/631 (50%), Positives = 389/631 (61%), Gaps = 16/631 (2%)
Query: 3 MEVVGTEAAPAEVKVTDGEVNLFQENESKATAKEREEAVLFGXXXXXXXXXXXXXXXXLA 62
ME G EA ++V DGE NLFQ+ ES+ATAKER EA +FG LA
Sbjct: 1 MEATGAEATLSQVTAVDGEDNLFQDKESRATAKERGEAAVFGLENIVTANGATSAAD-LA 59
Query: 63 PPKDAEEDWPEARKTHSFFFVKIRLLEDPKLKMKIDQAEKDFQKKIQARSQIFEAIKAKK 122
PPKD ++WPE ++TH+FFFV+I EDP LK K++QA+K+ QKKIQARS IFEA++ K+
Sbjct: 60 PPKDVVDEWPEPKQTHTFFFVRICSYEDPSLKAKLEQADKECQKKIQARSHIFEALRTKR 119
Query: 123 NERFGIISELKPLAAENKQYNEAVSEKLKAIEPLRNRLGKFRDENNAIRAQGAGICSSIE 182
+ER IISELKPLAAENKQYNE VS KLK IEPL+ LGKFR ENNA+RAQGAG+CSSIE
Sbjct: 120 SERSNIISELKPLAAENKQYNEVVSGKLKEIEPLQKSLGKFRSENNAMRAQGAGLCSSIE 179
Query: 183 ELEKSIKRLNDRISHESIPLDEEKRLIKQIRELEKTRPKVISTSANRAQIQDTVVERDAI 242
EL++ IK LNDRISHESI LDEEKRL+K+I++L TR KVI +A RA++QDTVVER I
Sbjct: 180 ELDQLIKSLNDRISHESISLDEEKRLVKEIKQLNGTRSKVIENAAKRAKMQDTVVERGTI 239
Query: 243 QDQVKIIGEGIDGVKKERQAVRSKIKVLEDELKAIDMEMGSLQEDLTAANARKDKAHESL 302
DQVK IG GID VK++RQAVR KIKVLED++ A+D E+ +LQ+DLTAA ARKDKA E+L
Sbjct: 240 HDQVKQIGVGIDEVKRDRQAVRDKIKVLEDQIHAVDGEIAALQDDLTAATARKDKAFEAL 299
Query: 303 VQLRHARDAYNASFHQNRQLLSKARDLASRSELAQVQELYKTQVDKFVAEWCNSKAFRED 362
+LR RD N SFHQ R + + RDL++R E+ VQ+L + +V+KF+A+WC+SK+FRED
Sbjct: 300 NELRKTRDLNNTSFHQYRTISNSVRDLSARGEVEAVQQLCQNEVEKFMAQWCSSKSFRED 359
Query: 363 YEKRILSSLNSRQLSRDGRMRNPDEKPIFIETEAAAPPVEQEPIQSKMXXXXXXXXXXXX 422
YEKRIL SLNSRQLSRDGRMRNPDEKPI +ET+ APP EQEP K
Sbjct: 360 YEKRILVSLNSRQLSRDGRMRNPDEKPIVLETQ-VAPPAEQEPAPLKKPAKQAKEAPAPR 418
Query: 423 XXVSPKDESRVXXXXXXXXXXXXXXXXX--XYXXXXXXXXXXXXXVDVAKLKEIKRQEEM 480
V+PKDE R VD AKLKE+KRQEE+
Sbjct: 419 ADVTPKDEIRAKAPAKAAKAKQPLDIDDIPDVHDDEPPKEKTKPKVDEAKLKEMKRQEEI 478
Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTESDNRSD 540
+T S+
Sbjct: 479 -------EKNKLALERKKKQAEKQAMKAAARAEKEAEKKLKEKEKKARKRSATAGGAESE 531
Query: 541 GAAEAQAEDDSAPASAPVMREQ---RESVRYSRNVVTKSKAPLPKAILRRKKAQSYWSWA 597
AAE+ A+ D A A +++ R+ V TK+K PLPKA+L+RKK+Q++WSW
Sbjct: 532 EAAESDAKSDEAEAQEEEPAAPVTIKKNARHRSTV-TKTKTPLPKAVLKRKKSQAFWSWG 590
Query: 598 GPXXXXXXXXXXXXXXXGYYQ-YYLPASASN 627
P YYQ YYLPAS SN
Sbjct: 591 APMAALAAALVALLGALVYYQYYYLPASTSN 621
>Os08g0513600 Conserved hypothetical protein
Length = 1440
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 14/218 (6%)
Query: 179 SSIEELEKSIKRLNDRISHESIPLDEEKRLIKQIRELEKTRPKVISTSANRAQIQDTVVE 238
+SI+E++ I I+HESI L EEKRL++ I+EL+ + ++ S ++A++ + +
Sbjct: 951 NSIQEIDDMIAMKEKIIAHESISLKEEKRLLQDIKELKAQKKQLSSNMGSKAEMGEAFEQ 1010
Query: 239 RDAIQDQVKIIGEGIDGVKKERQAVRSKIKVLEDEL----KAIDME---MGSLQEDLTAA 291
++ I +Q KI+ KK+ + + +K LED+ KA D E + L E+ AA
Sbjct: 1011 KEHIHEQQKIL-------KKDSDVLLTNLKSLEDKTRFIKKAFDDERDALRKLTEEHQAA 1063
Query: 292 NARKDKAHESLVQLRHARDAYNASFHQNRQLLSKARDLASRSELAQVQELYKTQVDKFVA 351
+ + KA++ +L+ N F R+ A++ ++ + QV+ F+
Sbjct: 1064 HEVRQKAYDEWFELKKEPGRKNKFFFMYRKDSRAAKEYVDNGDMKGLVLFCNNQVESFMV 1123
Query: 352 EWCNSKAFREDYEKRILSSLNSRQLSRDGRMRNPDEKP 389
W FR Y + +S R + DGR PDE P
Sbjct: 1124 LWNKDDDFRRQYVESNKNSTLRRLGTSDGRKLGPDEVP 1161
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.127 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,686,217
Number of extensions: 508389
Number of successful extensions: 2187
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2180
Number of HSP's successfully gapped: 5
Length of query: 627
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 520
Effective length of database: 11,448,903
Effective search space: 5953429560
Effective search space used: 5953429560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)