BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0345000 Os09g0345000|AK121772
(116 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0345000 Conserved hypothetical protein 242 4e-65
Os01g0731000 Conserved hypothetical protein 141 9e-35
Os05g0529400 Conserved hypothetical protein 140 2e-34
>Os09g0345000 Conserved hypothetical protein
Length = 116
Score = 242 bits (617), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MGCAGSTPMGAPESDATKKIRKPKPWKHPQPITMVQLTKMREEFWDTAPHYGGRKEIWDA 60
MGCAGSTPMGAPESDATKKIRKPKPWKHPQPITMVQLTKMREEFWDTAPHYGGRKEIWDA
Sbjct: 1 MGCAGSTPMGAPESDATKKIRKPKPWKHPQPITMVQLTKMREEFWDTAPHYGGRKEIWDA 60
Query: 61 LRVAAESEVSLAQAIVESAAIIVSNTDLTLCYDERGAKYELPKYVLSEPTNLIQDS 116
LRVAAESEVSLAQAIVESAAIIVSNTDLTLCYDERGAKYELPKYVLSEPTNLIQDS
Sbjct: 61 LRVAAESEVSLAQAIVESAAIIVSNTDLTLCYDERGAKYELPKYVLSEPTNLIQDS 116
>Os01g0731000 Conserved hypothetical protein
Length = 113
Score = 141 bits (356), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 86/115 (74%), Positives = 100/115 (86%), Gaps = 3/115 (2%)
Query: 1 MGCAGSTPMGAPESDATKKIRKPKPWKHPQPITMVQLTKMREEFWDTAPHYGGRKEIWDA 60
MGCAGSTP D +KK++KPKPWKH Q IT QL +MR+EFWDTAPHYGG+KEIWDA
Sbjct: 1 MGCAGSTP---KTDDNSKKLKKPKPWKHNQAITTTQLKQMRDEFWDTAPHYGGQKEIWDA 57
Query: 61 LRVAAESEVSLAQAIVESAAIIVSNTDLTLCYDERGAKYELPKYVLSEPTNLIQD 115
LR AAE+E+SLAQ IV+SA IIVSN+D+T+CYDERGAKYELPKYVLSEPTNLI++
Sbjct: 58 LRAAAEAELSLAQTIVDSAGIIVSNSDMTICYDERGAKYELPKYVLSEPTNLIRE 112
>Os05g0529400 Conserved hypothetical protein
Length = 113
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/115 (71%), Positives = 92/115 (80%), Gaps = 3/115 (2%)
Query: 1 MGCAGSTPMGAPESDATKKIRKPKPWKHPQPITMVQLTKMREEFWDTAPHYGGRKEIWDA 60
MGCAGSTP S KK + K H Q IT QL+KMREEFWDTAPHYGG+KEIWDA
Sbjct: 1 MGCAGSTPKVDENSKKLKKPKPWK---HTQAITPTQLSKMREEFWDTAPHYGGQKEIWDA 57
Query: 61 LRVAAESEVSLAQAIVESAAIIVSNTDLTLCYDERGAKYELPKYVLSEPTNLIQD 115
LR AAE+E+ LAQ IV SA I+VSN+D+TLCYDERGAKYELPKYVLSEPTNLI++
Sbjct: 58 LRAAAEAELPLAQTIVNSAGIVVSNSDMTLCYDERGAKYELPKYVLSEPTNLIRE 112
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,109,665
Number of extensions: 151030
Number of successful extensions: 331
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 3
Length of query: 116
Length of database: 17,035,801
Length adjustment: 83
Effective length of query: 33
Effective length of database: 12,702,039
Effective search space: 419167287
Effective search space used: 419167287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 149 (62.0 bits)