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Os09g0345000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0152) R2 : 0.103
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.231 (0.0319) R2dN8 : 0.133 R2N8 : 0.103
σ : 0.285
deviance : 37.39
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.98 0.199 10.2 -0.471 0.175 -0.374 0.332 0.529 -0.226 6.19 11.08 901 -- --
18.36 0.2 10.2 -0.485 0.163 -0.366 0.215 -- -0.223 6.21 10.01 891 -- --
18.15 0.198 10.2 -0.456 0.169 -0.393 -- 0.344 -0.223 6.05 10.26 905 -- --
18.25 0.199 10.2 -0.474 0.138 -0.422 -- -- -0.222 6.15 10 905 -- --
18.76 0.202 10.2 -0.47 -- -0.465 -- 0.214 -0.194 -- 10.06 835 -- --
20.09 0.21 10.2 -0.579 0.408 -- 0.0846 -- -0.301 6.94 -- -- -- --
20.11 0.21 10.2 -0.577 0.408 -- -- -- -0.301 6.96 -- -- -- --
18.59 0.201 10.2 -0.507 -- -0.507 -- -- -0.241 -- 10 829 -- --
24.76 0.232 10.2 -- 0.126 -0.429 -- -- -0.224 6.24 10 901 -- --
28.86 0.251 10.2 -0.569 -- -- -- -- -0.294 -- -- -- -- --
28.88 0.251 10.2 -- 0.402 -- -- -- -0.237 7.05 -- -- -- --
24.36 0.23 10.2 -- -- -0.595 -- -- -0.163 -- 10.02 871 -- --
37.39 0.285 10.2 -- -- -- -- -- -0.231 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 18.02 humidity 80.0 1440 < th dose dependent rect. 9 1
2 18.07 humidity 70.0 1440 > th dose independent rect. 7 4
3 18.07 radiation 20.0 90 < th dose independent rect. 5 10
4 18.08 radiation 20.0 90 < th dose independent rect. 5 21
12 18.09 humidity 70.0 1440 > th dose independent rect. 22 13
14 18.10 humidity 80.0 1440 < th dose independent rect. 8 2
32 18.14 humidity 90.0 14400 > th dose dependent rect. 4 4
34 18.15 humidity 90.0 14400 > th dose dependent rect. 5 2
48 18.17 humidity 70.0 1440 < th dose independent sin 7 NA
50 18.17 humidity 70.0 1440 > th dose independent rect. 10 1
68 18.19 humidity 70.0 1440 > th dose independent sin 8 NA
90 18.21 humidity 80.0 1440 < th dose dependent rect. 3 8
94 18.22 humidity 90.0 14400 > th dose independent rect. 3 5
104 18.23 radiation 40.0 90 < th dose dependent rect. 5 10
105 18.24 wind 9.0 4320 < th dose independent rect. 7 1
122 18.25 humidity 90.0 14400 > th dose independent rect. 4 3
136 18.29 atmosphere 1005.0 30 > th dose dependent rect. 6 3
158 18.31 humidity 50.0 14400 > th dose dependent rect. 3 3
161 18.31 radiation 20.0 720 < th dose dependent rect. 19 22
164 18.32 radiation 10.0 10 < th dose independent rect. 6 8
170 18.33 humidity 90.0 14400 < th dose independent rect. 2 6
184 18.34 radiation 20.0 270 < th dose independent rect. 3 12
185 18.34 humidity 90.0 270 > th dose dependent rect. 20 3
190 18.35 humidity 70.0 90 > th dose independent rect. 5 11
194 18.35 radiation 30.0 90 < th dose dependent rect. 5 21
199 18.36 humidity 90.0 14400 < th dose independent rect. 24 9
210 18.36 radiation 10.0 10 < th dose independent rect. 6 20
243 18.38 radiation 20.0 720 < th dose dependent rect. 4 13
280 18.42 humidity 90.0 14400 < th dose independent rect. 6 1
302 18.42 humidity 90.0 14400 > th dose dependent rect. 18 13
320 18.43 humidity 90.0 14400 > th dose dependent rect. 22 10
322 18.43 humidity 90.0 14400 > th dose dependent rect. 20 11
339 18.44 humidity 90.0 14400 < th dose independent rect. 21 11
342 18.44 humidity 70.0 270 > th dose independent rect. 3 12
346 18.44 humidity 90.0 14400 > th dose dependent sin 8 NA
366 18.45 humidity 90.0 14400 > th dose independent sin 9 NA
367 18.45 humidity 90.0 14400 < th dose independent rect. 5 3
408 18.45 radiation 20.0 720 < th dose dependent rect. 5 18
415 18.46 wind 1.0 43200 > th dose independent rect. 22 7
464 18.47 humidity 80.0 1440 < th dose dependent sin 7 NA
500 18.48 humidity 50.0 14400 > th dose dependent rect. 1 6
518 18.49 humidity 90.0 14400 < th dose independent sin 9 NA
531 18.49 wind 9.0 30 < th dose independent rect. 7 23
534 18.49 radiation 20.0 720 < th dose dependent sin 1 NA
535 18.49 atmosphere 1005.0 270 > th dose dependent rect. 4 2
558 18.49 humidity 90.0 14400 > th dose dependent rect. 23 20
561 18.50 humidity 90.0 10 < th dose independent rect. 6 1
584 18.50 humidity 80.0 14400 > th dose dependent rect. 22 1
585 18.50 humidity 80.0 14400 > th dose dependent rect. 21 5
590 18.50 radiation 30.0 10 < th dose dependent rect. 6 9
612 18.51 temperature 25.0 10 > th dose independent rect. 6 1
616 18.51 temperature 25.0 10 > th dose independent rect. 6 3
620 18.51 wind 1.0 43200 < th dose independent rect. 23 6
633 18.51 humidity 70.0 720 > th dose independent rect. 3 20
636 18.51 atmosphere 995.0 30 > th dose independent rect. 7 23
637 18.51 radiation 10.0 720 > th dose independent rect. 8 23
638 18.51 radiation 10.0 720 > th dose independent rect. 14 23
641 18.51 humidity 90.0 10 < th dose dependent rect. 6 1
672 18.51 radiation 20.0 10 < th dose dependent rect. 6 20
680 18.52 temperature 10.0 1440 > th dose independent rect. 7 1
684 18.52 temperature 30.0 1440 < th dose independent rect. 7 1
688 18.52 humidity 50.0 1440 > th dose independent rect. 7 1
693 18.52 atmosphere 1005.0 10 > th dose independent rect. 6 1
695 18.52 atmosphere 995.0 1440 > th dose independent rect. 7 1
696 18.52 atmosphere 1015.0 1440 < th dose independent rect. 7 1
722 18.52 temperature 10.0 1440 > th dose independent rect. 8 23
727 18.52 temperature 10.0 30 > th dose dependent rect. 6 1
730 18.52 humidity 50.0 1440 > th dose dependent rect. 9 1
769 18.53 wind 5.0 30 < th dose independent rect. 6 1
772 18.53 temperature 10.0 30 > th dose independent rect. 6 1
775 18.53 temperature 30.0 30 < th dose independent rect. 6 1
776 18.53 humidity 50.0 30 > th dose independent rect. 6 1
779 18.53 atmosphere 995.0 30 > th dose independent rect. 6 1
780 18.53 atmosphere 1015.0 30 < th dose independent rect. 6 1
781 18.53 radiation 20.0 30 < th dose independent rect. 6 1
784 18.53 precipitation 0.1 30 < th dose independent rect. 6 1
785 18.53 radiation 10.0 1440 < th dose independent rect. 3 2
788 18.53 radiation 10.0 10 < th dose independent rect. 6 6
812 18.53 temperature 10.0 30 > th dose independent rect. 7 23
819 18.53 radiation 30.0 30 < th dose dependent rect. 6 1
821 18.53 precipitation 0.1 30 < th dose dependent rect. 6 1
833 18.53 radiation 20.0 720 < th dose dependent rect. 8 15
851 18.54 wind 1.0 30 > th dose independent rect. 6 1
855 18.54 radiation 1.0 30 > th dose independent rect. 6 1
856 18.54 radiation 20.0 720 < th dose independent rect. 11 2
875 18.54 wind 9.0 30 < th dose dependent rect. 6 1
877 18.54 humidity 50.0 14400 > th dose dependent rect. 22 1
925 18.55 radiation 10.0 720 > th dose independent rect. 8 10
952 18.55 humidity 70.0 720 > th dose independent rect. 10 23
954 18.55 precipitation 0.1 10 < th dose independent rect. 7 23
960 18.55 humidity 50.0 30 > th dose dependent rect. 6 1
962 18.55 atmosphere 995.0 30 > th dose dependent rect. 6 1
990 18.55 precipitation 0.1 10 < th dose dependent rect. 7 23
992 18.56 radiation 10.0 720 > th dose independent no NA NA