BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0345000 Os09g0345000|AK121772
(116 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G53400.1 | chr1:19925009-19926400 FORWARD LENGTH=115 187 8e-49
AT5G45740.1 | chr5:18556975-18558097 REVERSE LENGTH=119 169 3e-43
AT1G16960.1 | chr1:5799998-5800624 FORWARD LENGTH=115 164 1e-41
>AT1G53400.1 | chr1:19925009-19926400 FORWARD LENGTH=115
Length = 114
Score = 187 bits (475), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 89/116 (76%), Positives = 100/116 (86%), Gaps = 2/116 (1%)
Query: 1 MGCAGSTPMGAPESDATKKIRKPKPWKHPQPITMVQLTKMREEFWDTAPHYGGRKEIWDA 60
MGCAGST A S KKIRKPKPWKH QPIT +L K+REEFWDTAPHYGGRKEIWDA
Sbjct: 1 MGCAGSTQSQADGS--VKKIRKPKPWKHTQPITKAELMKLREEFWDTAPHYGGRKEIWDA 58
Query: 61 LRVAAESEVSLAQAIVESAAIIVSNTDLTLCYDERGAKYELPKYVLSEPTNLIQDS 116
LR AAE+++SLAQAIV+SA +IV NTDLT+CYDERGAKYELPKYVLSEPTNL +++
Sbjct: 59 LRAAAEADISLAQAIVDSAGVIVQNTDLTVCYDERGAKYELPKYVLSEPTNLEEEN 114
>AT5G45740.1 | chr5:18556975-18558097 REVERSE LENGTH=119
Length = 118
Score = 169 bits (427), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 92/115 (80%)
Query: 1 MGCAGSTPMGAPESDATKKIRKPKPWKHPQPITMVQLTKMREEFWDTAPHYGGRKEIWDA 60
MGC GS+ KKI KPKPW H +PIT QLT MREEFWDT+PHYGG++EIW+A
Sbjct: 1 MGCIGSSQARNEGGAKRKKIMKPKPWAHTEPITRAQLTNMREEFWDTSPHYGGQREIWEA 60
Query: 61 LRVAAESEVSLAQAIVESAAIIVSNTDLTLCYDERGAKYELPKYVLSEPTNLIQD 115
LR AAE+++ LAQ IV+SA +IV N DLTLC+DERGA+YELP+YVLSEPTNLI++
Sbjct: 61 LRAAAEADLKLAQTIVDSAGVIVQNRDLTLCWDERGARYELPRYVLSEPTNLIRE 115
>AT1G16960.1 | chr1:5799998-5800624 FORWARD LENGTH=115
Length = 114
Score = 164 bits (414), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 76/114 (66%), Positives = 94/114 (82%), Gaps = 4/114 (3%)
Query: 1 MGCAGSTPMGAPESDATKKIRKPKPWKHPQPITMVQLTKMREEFWDTAPHYGGRKEIWDA 60
MGC+ S + + + KIR+PK WKHPQPI+ +LT+MREEFWDTAPHYGG+KEIWDA
Sbjct: 1 MGCSSSRTIAEGKKE---KIRRPKTWKHPQPISRDELTQMREEFWDTAPHYGGKKEIWDA 57
Query: 61 LRVAA-ESEVSLAQAIVESAAIIVSNTDLTLCYDERGAKYELPKYVLSEPTNLI 113
LR AA E ++SLAQ I+ESA +IV NTDLT+CYDE+G+KYELPKYVL +P+NLI
Sbjct: 58 LRAAAEEDDLSLAQTILESAGVIVQNTDLTICYDEKGSKYELPKYVLRDPSNLI 111
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.129 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,524,721
Number of extensions: 89415
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 3
Length of query: 116
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 31
Effective length of database: 8,776,209
Effective search space: 272062479
Effective search space used: 272062479
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 104 (44.7 bits)