BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0309900 Os09g0309900|AK121830
         (136 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0309900  Hypothetical protein                                151   1e-37
Os11g0233400  Conserved hypothetical protein                      140   4e-34

>Os09g0309900 Hypothetical protein
          Length = 136

 Score =  151 bits (381), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 85/136 (62%)

Query: 1   DLQVCPXXXXXXXXXXXXXXXHRRTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           DLQVCP               HRRTAA                                 
Sbjct: 1   DLQVCPRRRRRRSGVRCYGRGHRRTAAVPGFPPPFQEPVPRPCCFPAYHPPPPSALASCC 60

Query: 61  XXXTTTTKEKCGDGKVRNVICRKICLLKMLQIHLAVCGVKQIRMPVMLGPCSISKLHLAA 120
              TTTTKEKCGDGKVRNVICRKICLLKMLQIHLAVCGVKQIRMPVMLGPCSISKLHLAA
Sbjct: 61  SNSTTTTKEKCGDGKVRNVICRKICLLKMLQIHLAVCGVKQIRMPVMLGPCSISKLHLAA 120

Query: 121 CTCVFFRLLGSNICEL 136
           CTCVFFRLLGSNICEL
Sbjct: 121 CTCVFFRLLGSNICEL 136



>Os11g0233400 Conserved hypothetical protein
          Length = 151

 Score =  140 bits (352), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/69 (97%), Positives = 68/69 (98%)

Query: 68  KEKCGDGKVRNVICRKICLLKMLQIHLAVCGVKQIRMPVMLGPCSISKLHLAACTCVFFR 127
           + KCGDGKVRNVICRKICLLKMLQIHLAVCGVKQIRMPVMLGPCSISKLHLAACTCVFFR
Sbjct: 83  RVKCGDGKVRNVICRKICLLKMLQIHLAVCGVKQIRMPVMLGPCSISKLHLAACTCVFFR 142

Query: 128 LLGSNICEL 136
           LLGSNICEL
Sbjct: 143 LLGSNICEL 151



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.332    0.141    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,722,230
Number of extensions: 74993
Number of successful extensions: 166
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 2
Length of query: 136
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 46
Effective length of database: 12,336,541
Effective search space: 567480886
Effective search space used: 567480886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 150 (62.4 bits)