Os09g0309900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os09g0309900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.7 | 0.372 | 10.9 | 0.158 | 1.38 | -0.509 | -0.194 | -0.117 | -1.18 | 19.9 | 19.46 | 119 | -- | -- |
| 62.75 | 0.369 | 10.9 | 0.16 | 1.38 | -0.505 | -0.226 | -- | -1.18 | 19.8 | 19.58 | 119 | -- | -- |
| 62.78 | 0.369 | 10.9 | 0.169 | 1.38 | -0.511 | -- | -0.151 | -1.18 | 19.9 | 19.57 | 121 | -- | -- |
| 62.91 | 0.369 | 10.9 | 0.167 | 1.38 | -0.515 | -- | -- | -1.18 | 19.9 | 19.57 | 121 | -- | -- |
| 78.58 | 0.413 | 10.9 | -0.0134 | -- | -1.4 | -- | 0.843 | -1.24 | -- | 2.035 | 833 | -- | -- |
| 70.08 | 0.392 | 10.9 | 0.188 | 1.36 | -- | -0.34 | -- | -1.15 | 18.8 | -- | -- | -- | -- |
| 70.37 | 0.393 | 10.9 | 0.194 | 1.36 | -- | -- | -- | -1.15 | 18.8 | -- | -- | -- | -- |
| 71.92 | 0.395 | 10.9 | 0.0481 | -- | -1.79 | -- | -- | -1.24 | -- | 2.16 | 841 | -- | -- |
| 63.65 | 0.372 | 10.9 | -- | 1.38 | -0.517 | -- | -- | -1.19 | 19.9 | 19.56 | 123 | -- | -- |
| 166.93 | 0.604 | 10.9 | 0.164 | -- | -- | -- | -- | -1.17 | -- | -- | -- | -- | -- |
| 71.36 | 0.395 | 10.9 | -- | 1.36 | -- | -- | -- | -1.17 | 18.8 | -- | -- | -- | -- |
| 71.67 | 0.394 | 10.9 | -- | -- | -1.84 | -- | -- | -1.25 | -- | 2.04 | 837 | -- | -- |
| 167.63 | 0.604 | 10.9 | -- | -- | -- | -- | -- | -1.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.52 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 22 |
| 2 | 51.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 22 |
| 3 | 51.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 22 |
| 5 | 51.31 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 10 | 51.77 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 12 | 51.77 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 13 | 51.77 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 16 | 51.77 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 17 | 51.77 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 18 | 51.77 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 21 | 51.77 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 22 |
| 22 | 51.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 2 |
| 23 | 51.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 24 | 51.82 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 25 | 51.82 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 27 | 51.86 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 30 | 51.91 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 35 | 52.18 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 38 | 52.21 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 54 | 52.27 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 4 |
| 56 | 52.27 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 67 | 52.29 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 68 | 52.30 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 73 | 52.40 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 92 | 52.52 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 102 | 52.55 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 4 |
| 104 | 52.55 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 105 | 52.56 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 122 | 52.67 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 129 | 52.71 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 132 | 52.71 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 133 | 52.71 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 134 | 52.71 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 168 | 52.90 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 174 | 52.99 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 177 | 53.01 | wind | 9.0 | 30 | < th | dose dependent | rect. | 5 | 4 |
| 236 | 53.49 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 238 | 53.51 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 270 | 53.73 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 273 | 53.76 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 325 | 54.01 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 329 | 54.01 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 340 | 54.03 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 348 | 54.06 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 349 | 54.08 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 355 | 54.12 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 376 | 54.26 | humidity | 50.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 387 | 54.30 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 393 | 54.35 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 395 | 54.36 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 424 | 54.50 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 503 | 54.84 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 8 |
| 514 | 54.89 | temperature | 15.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 516 | 54.91 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 568 | 55.08 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 9 |
| 585 | 55.16 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 9 |
| 587 | 55.16 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 9 |
| 588 | 55.16 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 601 | 55.21 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 9 |
| 602 | 55.21 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 632 | 55.26 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 634 | 55.28 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 9 |
| 635 | 55.28 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 9 |
| 654 | 55.31 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 9 | 20 |
| 662 | 55.35 | radiation | 40.0 | 90 | < th | dose independent | rect. | 17 | 15 |
| 666 | 55.36 | humidity | 50.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 669 | 55.37 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 673 | 55.39 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 700 | 55.46 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 727 | 55.52 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 13 |
| 736 | 55.58 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 738 | 55.58 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 4 | 17 |
| 764 | 55.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 8 |
| 767 | 55.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 773 | 55.70 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 17 |
| 774 | 55.70 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 777 | 55.71 | wind | 9.0 | 90 | < th | dose independent | rect. | 17 | 15 |
| 813 | 55.80 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 869 | 55.90 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 930 | 56.12 | humidity | 60.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 937 | 56.14 | wind | 9.0 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 938 | 56.15 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 939 | 56.15 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 941 | 56.15 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 942 | 56.15 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 948 | 56.15 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 949 | 56.15 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 977 | 56.20 | wind | 1.0 | 10 | > th | dose independent | rect. | 9 | 8 |
| 978 | 56.20 | radiation | 1.0 | 90 | > th | dose independent | rect. | 8 | 9 |
| 979 | 56.20 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 19 | 8 |