Os11g0233400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0233400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.08 | 0.358 | 12.4 | -0.279 | 3.25 | 2.27 | 1.12 | 1.07 | -1.46 | 18.9 | 8.813 | 348 | 20.7 | 14.3 |
| 58.37 | 0.356 | 12.4 | -0.322 | 3.28 | 2.27 | 0.31 | -- | -1.45 | 18.9 | 7.881 | 349 | 20.7 | 14.2 |
| 57.99 | 0.355 | 12.4 | -0.402 | 3.5 | 2.49 | -- | -0.198 | -1.48 | 19 | 4.307 | 392 | 20.3 | 14.7 |
| 57.91 | 0.354 | 12.4 | -0.397 | 3.56 | 2.54 | -- | -- | -1.48 | 19 | 3.701 | 395 | 20.4 | 14.5 |
| 104.08 | 0.475 | 12.4 | -1.44 | -- | 2.27 | -- | -4.69 | -1.7 | -- | -4.049 | 2473 | 4.37 | 10 |
| 95.57 | 0.458 | 12.3 | -0.138 | 1.32 | -- | 0.0972 | -- | -1.3 | 18.7 | -- | -- | -- | -- |
| 95.59 | 0.458 | 12.3 | -0.139 | 1.33 | -- | -- | -- | -1.3 | 18.6 | -- | -- | -- | -- |
| 71.41 | 0.394 | 12.4 | -0.706 | -- | 2.33 | -- | -- | -1.77 | -- | -6.548 | 2515 | 6.02 | 6.87 |
| 61.22 | 0.364 | 12.4 | -- | 3.52 | 2.48 | -- | -- | -1.43 | 18.9 | 3.925 | 387 | 20.5 | 14.4 |
| 187.21 | 0.639 | 12.3 | -0.171 | -- | -- | -- | -- | -1.33 | -- | -- | -- | -- | -- |
| 96.1 | 0.459 | 12.3 | -- | 1.33 | -- | -- | -- | -1.28 | 18.6 | -- | -- | -- | -- |
| 69.28 | 0.388 | 12.3 | -- | -- | 2.08 | -- | -- | -1.34 | -- | -5.948 | 2468 | 7.31 | 5.35 |
| 187.97 | 0.64 | 12.3 | -- | -- | -- | -- | -- | -1.31 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.34 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 2 | 61.96 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 3 | 62.09 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 5 | 62.52 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 11 | 63.44 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 20 | 64.03 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 21 | 64.04 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 25 | 64.21 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 93 | 66.88 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 142 | 68.13 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 153 | 68.38 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 7 |
| 161 | 68.51 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 163 | 68.56 | temperature | 20.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 181 | 68.80 | temperature | 25.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 185 | 68.88 | temperature | 30.0 | 90 | < th | dose dependent | sin | 3 | NA |
| 274 | 70.05 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 5 |
| 276 | 70.08 | temperature | 30.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 375 | 71.15 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 394 | 71.37 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 427 | 71.65 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 470 | 72.01 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 471 | 72.03 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 490 | 72.21 | temperature | 25.0 | 270 | > th | dose independent | sin | 6 | NA |
| 503 | 72.31 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 18 |
| 515 | 72.40 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 9 |
| 523 | 72.45 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 525 | 72.45 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 550 | 72.63 | temperature | 25.0 | 270 | < th | dose independent | sin | 6 | NA |
| 563 | 72.71 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 564 | 72.71 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 599 | 72.96 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 625 | 73.11 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 627 | 73.11 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 628 | 73.11 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 631 | 73.11 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 632 | 73.11 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 633 | 73.11 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 636 | 73.11 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 679 | 73.31 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 683 | 73.33 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 729 | 73.60 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 748 | 73.69 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 771 | 73.80 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 772 | 73.81 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 783 | 73.88 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 800 | 73.94 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 810 | 73.96 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 18 |
| 866 | 74.19 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 882 | 74.25 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 915 | 74.34 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 919 | 74.34 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 940 | 74.42 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 970 | 74.53 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 3 |