BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0309600 Os09g0309600|AK106857
         (159 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0309600  Conserved hypothetical protein                      228   2e-60
Os08g0360700  Hypothetical protein                                 86   1e-17

>Os09g0309600 Conserved hypothetical protein
          Length = 159

 Score =  228 bits (581), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 118/159 (74%)

Query: 1   MENKKRXXXXXXXXXXXXXXXXXXXXXXFTFMATEANAQVFCRSQFNLANEACSLRTFSG 60
           MENKKR                      FTFMATEANAQVFCRSQFNLANEACSLRTFSG
Sbjct: 1   MENKKRSPPLPPLSSVAAVVVLLVLLLLFTFMATEANAQVFCRSQFNLANEACSLRTFSG 60

Query: 61  PNPAVPLRQLNESAVAVMAXXXXXXXXXXXXXXXXXXXLRSHRADPYDTACCRRLMGIDN 120
           PNPAVPLRQLNESAVAVMA                   LRSHRADPYDTACCRRLMGIDN
Sbjct: 61  PNPAVPLRQLNESAVAVMAEHREREHGHGGGGGGGGGRLRSHRADPYDTACCRRLMGIDN 120

Query: 121 ACICQAMSYLPVFMSRVKHAIKLTPVPGCDVSFECAAAY 159
           ACICQAMSYLPVFMSRVKHAIKLTPVPGCDVSFECAAAY
Sbjct: 121 ACICQAMSYLPVFMSRVKHAIKLTPVPGCDVSFECAAAY 159



>Os08g0360700 Hypothetical protein
          Length = 65

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 46/57 (80%)

Query: 103 RADPYDTACCRRLMGIDNACICQAMSYLPVFMSRVKHAIKLTPVPGCDVSFECAAAY 159
           R DP+DTACCRRLM +DN+C+CQA + LP FM+ V+H ++LTPV GC V+FEC  ++
Sbjct: 9   REDPHDTACCRRLMSLDNSCVCQAAARLPAFMTAVRHVVRLTPVDGCHVTFECPGSF 65



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.132    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,816,711
Number of extensions: 103596
Number of successful extensions: 189
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 2
Length of query: 159
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 66
Effective length of database: 12,179,899
Effective search space: 803873334
Effective search space used: 803873334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 152 (63.2 bits)