Os09g0309600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0309600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.74 | 0.465 | 9.73 | -2.24 | 1.24 | -0.873 | 1.19 | 0.524 | 0.0882 | 6.19 | 26.9 | 10 | -- | -- |
| 98.01 | 0.465 | 9.72 | -2.15 | 1.24 | -0.917 | 1.27 | -- | 0.105 | 6.11 | 26.9 | 10 | -- | -- |
| 101.11 | 0.468 | 9.74 | -2.25 | 1.23 | -0.837 | -- | 0.73 | 0.0833 | 6.27 | 26.9 | 11 | -- | -- |
| 101.83 | 0.473 | 9.72 | -2.12 | 1.22 | -0.862 | -- | -- | 0.115 | 6.28 | 26.24 | 11 | -- | -- |
| 172.73 | 0.615 | 9.73 | -2.09 | -- | -0.83 | -- | 0.151 | 0.203 | -- | 23.36 | 11 | -- | -- |
| 110.42 | 0.493 | 9.68 | -1.94 | 1.15 | -- | 1.01 | -- | 0.304 | 6.87 | -- | -- | -- | -- |
| 112.99 | 0.498 | 9.68 | -1.92 | 1.16 | -- | -- | -- | 0.302 | 6.97 | -- | -- | -- | -- |
| 172.66 | 0.615 | 9.73 | -2.07 | -- | -0.85 | -- | -- | 0.206 | -- | 23.4 | 3 | -- | -- |
| 209.95 | 0.675 | 9.62 | -- | 1.1 | 0.223 | -- | -- | 0.544 | 7.3 | 33.43 | 25 | -- | -- |
| 183.22 | 0.632 | 9.7 | -1.9 | -- | -- | -- | -- | 0.324 | -- | -- | -- | -- | -- |
| 210.42 | 0.679 | 9.63 | -- | 1.14 | -- | -- | -- | 0.517 | 7.07 | -- | -- | -- | -- |
| 253.51 | 0.742 | 9.62 | -- | -- | 1.23 | -- | -- | 0.68 | -- | 70.44 | 475 | -- | -- |
| 278.33 | 0.779 | 9.65 | -- | -- | -- | -- | -- | 0.535 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 15 |
| 4 | 96.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 7 |
| 6 | 96.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 21 |
| 8 | 96.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 11 | 96.75 | temperature | 30 | 10 | < th | dose dependent | sin | 9 | NA |
| 20 | 97.23 | temperature | 10 | 10 | > th | dose dependent | sin | 9 | NA |
| 23 | 97.30 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 17 |
| 41 | 97.59 | temperature | 15 | 30 | > th | dose dependent | rect. | 4 | 21 |
| 49 | 97.75 | temperature | 10 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 58 | 97.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 59 | 97.87 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 61 | 97.95 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 21 |
| 81 | 98.17 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 94 | 98.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 9 |
| 105 | 98.36 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 14 |
| 108 | 98.37 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 114 | 98.41 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 137 | 98.51 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 140 | 98.54 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 151 | 98.57 | temperature | 20 | 30 | > th | dose independent | rect. | 4 | 21 |
| 163 | 98.63 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 166 | 98.63 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 167 | 98.63 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 168 | 98.64 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 174 | 98.65 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 21 |
| 176 | 98.66 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 7 |
| 184 | 98.70 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 195 | 98.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 4 |
| 199 | 98.75 | temperature | 10 | 90 | > th | dose dependent | rect. | 17 | 8 |
| 228 | 98.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 242 | 98.90 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 260 | 98.97 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 262 | 98.97 | radiation | 30 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 272 | 99.01 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 294 | 99.08 | wind | 1 | 270 | > th | dose independent | rect. | 23 | 16 |
| 302 | 99.10 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 312 | 99.14 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 318 | 99.16 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 325 | 99.18 | temperature | 20 | 10 | > th | dose independent | rect. | 2 | 23 |
| 328 | 99.19 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 339 | 99.22 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 346 | 99.23 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 362 | 99.27 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 365 | 99.27 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 371 | 99.27 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 392 | 99.30 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 22 |
| 423 | 99.33 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 16 |
| 458 | 99.36 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 24 | 8 |
| 459 | 99.36 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 482 | 99.38 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 540 | 99.43 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 543 | 99.43 | atmosphere | 1010 | 43200 | < th | dose dependent | sin | 3 | NA |
| 560 | 99.45 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 594 | 99.47 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 596 | 99.47 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 627 | 99.49 | temperature | 30 | 4320 | < th | dose dependent | rect. | 4 | 4 |
| 697 | 99.53 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 730 | 99.55 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 756 | 99.56 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 779 | 99.57 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 24 | 13 |
| 780 | 99.57 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 781 | 99.57 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 783 | 99.57 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 804 | 99.58 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 853 | 99.60 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 855 | 99.60 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 869 | 99.60 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 7 | 5 |
| 941 | 99.63 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 7 | NA |
| 985 | 99.64 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 23 |