BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0299500 Os09g0299500|J065023H16
         (194 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0299500  RNA-binding region RNP-1 (RNA recognition moti...   374   e-104
Os07g0296200  RNA-binding region RNP-1 (RNA recognition moti...   270   4e-73

>Os09g0299500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 194

 Score =  374 bits (959), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/194 (93%), Positives = 181/194 (93%)

Query: 1   MAGYMSRGPPNGSVYVCNLPPGTDETMLADYFGTIGLLKKDKRTGRPKIWIYRDKVTNEP 60
           MAGYMSRGPPNGSVYVCNLPPGTDETMLADYFGTIGLLKKDKRTGRPKIWIYRDKVTNEP
Sbjct: 1   MAGYMSRGPPNGSVYVCNLPPGTDETMLADYFGTIGLLKKDKRTGRPKIWIYRDKVTNEP 60

Query: 61  KGDATVTYEDPHAASAAVEWFNNKDFHGSTIQVHIAESKNKDTYDNSASLNNSAGLGGQD 120
           KGDATVTYEDPHAASAAVEWFNNKDFHGSTIQVHIAESKNKDTYDNSASLNNSAGLGGQD
Sbjct: 61  KGDATVTYEDPHAASAAVEWFNNKDFHGSTIQVHIAESKNKDTYDNSASLNNSAGLGGQD 120

Query: 121 ELDNXXXXXXXXXXXXXKAWQQDGDWLCPNTRSVLIGKRLPCHLISFADYYSSMVITVYS 180
           ELDN             KAWQQDGDWLCPNTRSVLIGKRLPCHLISFADYYSSMVITVYS
Sbjct: 121 ELDNGAGRGRGHGDGPGKAWQQDGDWLCPNTRSVLIGKRLPCHLISFADYYSSMVITVYS 180

Query: 181 KSCLILLPLPVVAM 194
           KSCLILLPLPVVAM
Sbjct: 181 KSCLILLPLPVVAM 194



>Os07g0296200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 394

 Score =  270 bits (690), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 137/172 (79%), Positives = 142/172 (82%), Gaps = 4/172 (2%)

Query: 1   MAGYMSRGPPNGSVYVCNLPPGTDETMLADYFGTIGLLKKDKRTGRPKIWIYRDKVTNEP 60
           MAG+MSRGPPNGSVYVCNLPPGTDETMLA+YFGTIGLLKKDKRTGRPKIWIYRDKVTNEP
Sbjct: 1   MAGFMSRGPPNGSVYVCNLPPGTDETMLAEYFGTIGLLKKDKRTGRPKIWIYRDKVTNEP 60

Query: 61  KGDATVTYEDPHAASAAVEWFNNKDFHGSTIQVHIAESKNKDTYDNS--ASLNNSAGLGG 118
           KGDATVTYEDPHAASAAVEWFNNKDFHGSTIQVHIAESKNKD  D+S  ASLNNSA LGG
Sbjct: 61  KGDATVTYEDPHAASAAVEWFNNKDFHGSTIQVHIAESKNKDMNDSSATASLNNSAELGG 120

Query: 119 QDELDNXXXXXXXXXXXXXKAWQQDGDWLCPNTR--SVLIGKRLPCHLISFA 168
           QDELDN             KAWQQDGDWLCPNT   +V    R  C+L   A
Sbjct: 121 QDELDNGEGRGRGRGDGPGKAWQQDGDWLCPNTSCGNVNFAFRGVCNLCGAA 172



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,194,972
Number of extensions: 278572
Number of successful extensions: 620
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 620
Number of HSP's successfully gapped: 2
Length of query: 194
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 99
Effective length of database: 12,075,471
Effective search space: 1195471629
Effective search space used: 1195471629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)