Os09g0299500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os09g0299500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.52 | 0.185 | 11.2 | -0.0677 | 0.187 | 0.53 | 0.343 | 0.467 | 0.336 | 17.9 | 54 | 599 | -- | -- |
| 15.71 | 0.185 | 11.2 | -0.0458 | 0.2 | 0.546 | 0.177 | -- | 0.342 | 17.4 | 53.9 | 553 | -- | -- |
| 15.72 | 0.185 | 11.2 | -0.0519 | 0.179 | 0.528 | -- | 0.229 | 0.337 | 18 | 52.43 | 610 | -- | -- |
| 15.77 | 0.185 | 11.2 | -0.0386 | 0.197 | 0.544 | -- | -- | 0.342 | 17.6 | 52 | 560 | -- | -- |
| 16.14 | 0.187 | 11.2 | -0.062 | -- | 0.391 | -- | 0.296 | 0.329 | -- | 51.61 | 832 | -- | -- |
| 19.39 | 0.206 | 11.2 | -0.0607 | 0.116 | -- | 0.0546 | -- | 0.326 | 9 | -- | -- | -- | -- |
| 19.4 | 0.206 | 11.2 | -0.0588 | 0.116 | -- | -- | -- | 0.326 | 8.98 | -- | -- | -- | -- |
| 16.27 | 0.188 | 11.2 | -0.0403 | -- | 0.395 | -- | -- | 0.334 | -- | 49 | 809 | -- | -- |
| 15.81 | 0.185 | 11.2 | -- | 0.201 | 0.553 | -- | -- | 0.344 | 17.6 | 49 | 560 | -- | -- |
| 20.17 | 0.21 | 11.2 | -0.059 | -- | -- | -- | -- | 0.327 | -- | -- | -- | -- | -- |
| 19.49 | 0.207 | 11.2 | -- | 0.116 | -- | -- | -- | 0.333 | 9.02 | -- | -- | -- | -- |
| 16.31 | 0.188 | 11.2 | -- | -- | 0.398 | -- | -- | 0.338 | -- | 49 | 818 | -- | -- |
| 20.26 | 0.21 | 11.2 | -- | -- | -- | -- | -- | 0.333 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.35 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 2 | 15.46 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 5 | 16 |
| 7 | 15.53 | humidity | 60.0 | 720 | > th | dose dependent | sin | 22 | NA |
| 10 | 15.53 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 3 | 18 |
| 11 | 15.53 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 19 | 15.56 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 25 | 15.58 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 26 | 15.58 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 36 | 15.60 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 1 | 20 |
| 38 | 15.60 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 44 | 15.61 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 45 | 15.62 | humidity | 50.0 | 720 | > th | dose dependent | no | NA | NA |
| 48 | 15.63 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 55 | 15.64 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 11 | 11 |
| 64 | 15.64 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 65 | 15.65 | humidity | 60.0 | 90 | > th | dose dependent | sin | 18 | NA |
| 68 | 15.65 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 10 | 10 |
| 69 | 15.65 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 11 | 14 |
| 73 | 15.65 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 74 | 15.65 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 87 | 15.67 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 100 | 15.68 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 6 | 14 |
| 117 | 15.69 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 17 |
| 121 | 15.69 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 126 | 15.69 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 127 | 15.70 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 9 | 10 |
| 143 | 15.70 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 148 | 15.71 | humidity | 90.0 | 720 | < th | dose dependent | sin | 22 | NA |
| 161 | 15.71 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 6 | 19 |
| 203 | 15.73 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 19 |
| 242 | 15.75 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 243 | 15.75 | humidity | 70.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 350 | 15.79 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 365 | 15.79 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 437 | 15.82 | humidity | 90.0 | 720 | < th | dose dependent | no | NA | NA |
| 450 | 15.82 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 451 | 15.82 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 479 | 15.84 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 13 | 7 |
| 496 | 15.85 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 497 | 15.85 | humidity | 70.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 557 | 15.87 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 650 | 15.90 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 672 | 15.91 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 724 | 15.94 | humidity | 70.0 | 720 | > th | dose independent | rect. | 11 | 23 |
| 743 | 15.95 | humidity | 70.0 | 270 | > th | dose independent | sin | 18 | NA |
| 775 | 15.96 | humidity | 70.0 | 270 | < th | dose independent | sin | 18 | NA |
| 776 | 15.96 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 782 | 15.96 | humidity | 70.0 | 270 | > th | dose independent | rect. | 13 | 21 |
| 821 | 15.98 | temperature | 25.0 | 720 | > th | dose dependent | sin | 17 | NA |
| 853 | 15.99 | humidity | 70.0 | 720 | > th | dose independent | rect. | 9 | 12 |
| 856 | 15.99 | humidity | 70.0 | 720 | > th | dose independent | rect. | 5 | 16 |
| 857 | 15.99 | humidity | 70.0 | 720 | > th | dose independent | rect. | 1 | 22 |
| 924 | 16.01 | humidity | 70.0 | 720 | > th | dose independent | rect. | 3 | 18 |
| 932 | 16.01 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 11 | 6 |
| 950 | 16.01 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 961 | 16.02 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 964 | 16.02 | humidity | 70.0 | 720 | > th | dose independent | rect. | 9 | 14 |
| 966 | 16.02 | humidity | 70.0 | 720 | > th | dose independent | rect. | 1 | 20 |
| 971 | 16.02 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 4 |
| 999 | 16.03 | humidity | 70.0 | 720 | > th | dose independent | rect. | 9 | 22 |