BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0299500 Os09g0299500|J065023H16
(194 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G50300.1 | chr1:18628818-18631662 REVERSE LENGTH=373 191 2e-49
AT5G58470.1 | chr5:23638566-23640854 REVERSE LENGTH=423 60 7e-10
AT3G52660.1 | chr3:19522598-19524735 FORWARD LENGTH=472 48 3e-06
>AT1G50300.1 | chr1:18628818-18631662 REVERSE LENGTH=373
Length = 372
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/151 (64%), Positives = 109/151 (72%), Gaps = 7/151 (4%)
Query: 1 MAGYMSRGPPNGSVYVCNLPPGTDETMLADYFGTIGLLKKDKRTGRPKIWIYRDKVTNEP 60
MAGY P NGSVYV NLP GTDE MLADYFGTIGLLK+DKRTG PK+W+YRDK T+EP
Sbjct: 1 MAGY----PTNGSVYVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEP 56
Query: 61 KGDATVTYEDPHAASAAVEWFNNKDFHGSTIQVHIAESKNKDTYDNSASLNNSAGLGGQD 120
KGDATVTYEDPHAA AAVEWFNNKDFHG+TI V +AESKNK+ D + GG +
Sbjct: 57 KGDATVTYEDPHAALAAVEWFNNKDFHGNTIGVFMAESKNKNAGDAVEFVEFD---GGAE 113
Query: 121 ELDNXXXXXXXXXXXXXKAWQQDGDWLCPNT 151
E + K WQQDGDW+CPNT
Sbjct: 114 ETNGGAGRGRGQADSSAKPWQQDGDWMCPNT 144
>AT5G58470.1 | chr5:23638566-23640854 REVERSE LENGTH=423
Length = 422
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 14 VYVCNLPPGTDETMLADYFGTIGLLKKDK-RTGRPKIWIYRDKV-TNEP---KGDATVTY 68
+Y+ NLPP L D FG IG + + K + G W Y K+ T+E KGDA + Y
Sbjct: 282 IYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEKGNYKGDACLAY 341
Query: 69 EDPHAASAAVEWFNNKDFHGSTIQVHIAE 97
EDP AA +A +FNN + G+ I V +AE
Sbjct: 342 EDPSAAHSAGGFFNNYEMRGNKISVTMAE 370
>AT3G52660.1 | chr3:19522598-19524735 FORWARD LENGTH=472
Length = 471
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 9 PPNGS-VYVCNLPPGTDETMLADYFGTIGLLKKDKRTGRPKIWIYRDKVTNEPKGDATVT 67
PP+GS VY+ +P E L + G+IG + + + I R+K + + KG A VT
Sbjct: 88 PPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTE--------VRIMREKDSGDGKGYAFVT 139
Query: 68 YEDPHAASAAVEWFNNKDFHGSTIQVHIAESKNK 101
+ A+ A++ NN DF G I+ ++K++
Sbjct: 140 FRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHR 173
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,524,650
Number of extensions: 179475
Number of successful extensions: 505
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 517
Number of HSP's successfully gapped: 4
Length of query: 194
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 101
Effective length of database: 8,556,881
Effective search space: 864244981
Effective search space used: 864244981
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)